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Method for detection of amino acids based on aerolysin nanochannel

A technology of aerolysin and nanochannels, applied in the direction of material electrochemical variables, etc., can solve the problems of complex operation, few, high cost, etc., and achieve the effect of convenient operation, active clinical treatment, and low price

Inactive Publication Date: 2020-02-11
EAST CHINA UNIV OF SCI & TECH
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, at present, there are not many methods that can simultaneously detect multiple amino acids. Although amino acid analyzers can analyze different amino acids at the same time, the operation is complicated, time-consuming, and relatively high in cost.

Method used

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  • Method for detection of amino acids based on aerolysin nanochannel
  • Method for detection of amino acids based on aerolysin nanochannel
  • Method for detection of amino acids based on aerolysin nanochannel

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0043] see figure 1 . A method for detecting amino acids based on aerolysin nanochannels for detecting cysteine, comprising the following steps:

[0044] (1) Designing DNA probe 1 and DNA probe 2, the DNA probe 1 and DNA probe 2 are connected with aldehyde groups, and the length of the bases is 4.

[0045] The mechanism of the reaction of the DNA probe 1 with the amino acid is:

[0046]

[0047] The mechanism of the reaction of the DNA probe 2 with the amino acid is:

[0048]

[0049] (2) Mix 20 μL, 200 μM, DNA probe 1 or DNA probe 2 solution with a pH value of 8.0 and 10 μL, 5 mM cysteine ​​solution with a pH value of 7.0 to 9.0, and place it at 70 ° C for 10 hours , using the addition reaction of aldehyde group and amino group to connect cysteine ​​to DNA probe.

[0050] (3) Preparation of aerolysin bionanochannels

[0051] ① Activated aerolysin

[0052] Dissolve aerolysin in trypsin-EDTA solution, the ratio of aerolysin to trypsin-EDTA solution is 1:100; place it ...

Embodiment 2

[0069] A method for detecting amino acids based on the aerolysin nanochannel is used for detecting histidine, and the basic steps are the same as those in Example 1.

[0070] The difference is:

[0071] (1) (with embodiment 1).

[0072] (2) Mix 20 μL, 200 μM, DNA probe 1 or probe 2 solution with a pH value of 8.0 and 10 μL, 500 mM, pH value of 8.0 histidine solution, and place it at 70 ° C for 10 hours to utilize the aldehyde group Addition reactions with amino groups link histidine to DNA probes.

[0073] (3) (with embodiment 1).

[0074] (4) Detection of histidine with aerolysin

[0075] ③ Acquisition of DNA probe-histidine single molecule signal

[0076] The obtained DNA probe-histidine reaction solution is added to the cis detection pool; the DNA probe-histidine single-molecule characteristic signal is collected—this signal is a single-molecule signal that can reflect the characteristics of histidine.

[0077] 4. Example 2 Statistically collects the DNA probe-histidin...

Embodiment 3

[0079] A method for detecting amino acids based on the aerolysin nanochannel is used for detecting alanine, and the basic steps are the same as those in Example 1.

[0080] The difference is:

[0081] (1) (with embodiment 1).

[0082] (2) Mix 20 μL, 200 μM, DNA probe 1 or DNA probe 2 solution with a pH value of 8.0 and 10 μL, 500 mM, alanine solution with a pH value of 8.0, and place it at 70 ° C for 10 hours. The addition reaction of a group and an amino group connects alanine to a DNA probe.

[0083] (3) (with embodiment 1).

[0084] (4) Detection of alanine with aerolysin

[0085] ③ Acquisition of DNA probe-alanine single molecule signal

[0086] The obtained DNA probe-alanine reaction solution is added to the cis detection pool; the DNA probe-alanine single-molecule characteristic signal is collected—this signal is a single-molecule signal that can reflect the characteristics of alanine.

[0087] 4. Example 3 Statistically collects the DNA probe-alanine single molecul...

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Abstract

The invention discloses an amino acid detection method based on an aerolysin nanochannel. The method comprises the steps as follows: (1) designing DNA probes connected with formyl groups; (2) connecting amino acid to the DNA probes; (3) preparing the aerolysin bio-nanochannel: I activating aerolysin; II preparing a phospholipid n-decane solution; III preparing a phospholipid bilayer; IV forming the aerolysin bio-nanochannel; (4) detecting amino acid with aerolysin: I acquiring DNA probe single-molecular signals; II acquiring amino acid single-molecular signals; III acquiring DNA probe-amino acid single-molecular signals; IV counting the acquired DNA probe-amino acid single-molecular signals to obtain amino acid characteristic information. Accordingly, different amino acids can be detectedsimultaneously. The method can detect different amino acids simultaneously at the single molecule level, is convenient to operate, real-time and accurate, can realize ultrasensitive resolution and hasvery active significance in life science research.

Description

technical field [0001] The invention relates to a detection technology for analyzing and detecting single molecules in life chemistry, in particular to a method for detecting amino acids based on an aerolysin nanochannel. [0002] technical background [0003] Biological nanochannels are a single-molecule detection method emerging in modern times to detect nucleic acids, polypeptides, and sugars. Currently, the most widely used protein pores are Staphylococcus α-hemolysin (α-hemolsyin) and Mycobacterium smegmatis (MspA). However, due to the limitation of the pore size of the protein pore itself, the above two protein channels are not enough to realize the micro resolution of DNA molecules. The aerolysin biological nanochannel has a smaller pore size, higher sensitivity, and its inner cavity is positively charged, which can effectively slow down the passing rate of DNA, thereby achieving high throughput, label-free, and high sensitivity. , DNA probe-based, single-molecule le...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): G01N27/26
CPCG01N27/26
Inventor 应佚伦路瑶孟福娜张隽佶李自远龙亿涛袁博
Owner EAST CHINA UNIV OF SCI & TECH
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