Primer and probe composition for detecting polymorphism of human CYP2C9 and VKORC1 genes, kit and application

A gene polymorphism and composition technology, applied in the field of molecular biology, can solve the problems of certain sample quantity requirements, easy pollution of amplification products, strict detection conditions, etc., and achieve high sensitivity and accuracy, effective Good for clinical operation and high sensitivity

Active Publication Date: 2018-09-25
SHANDONG VIGENE BIOSCI
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Among them, the most commonly used sequencing method can directly detect the position and type of the mutation site, but the method has cumbersome operation steps, a long detection cycle, and the amplification product is prone to contamination; the chip method involves gene-specific amplification, hybridization, detection, etc. High-throughput analysis can be carried out in one step, but the cost is high, the detection steps are complicated, and there are certain requirements for the number of samples; the high-resolution melting curve method has simple steps and does not require post-amplification processing, but it does not contain specificity. Allele specific amplification method uses ARMS primers for specific amplification, the operation method is simple, and no post-amplification treatment is required, but the primer design Difficult to optimize, strict detection conditions, prone to false positives due to primer mismatch in actual operation

Method used

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  • Primer and probe composition for detecting polymorphism of human CYP2C9 and VKORC1 genes, kit and application
  • Primer and probe composition for detecting polymorphism of human CYP2C9 and VKORC1 genes, kit and application
  • Primer and probe composition for detecting polymorphism of human CYP2C9 and VKORC1 genes, kit and application

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0095] Embodiment 1 The clinical application of detection kit of the present invention

[0096] 1. Design of specific primers and fluorescent probes for CYP2C9 and VKORC1 gene polymorphism sites

[0097] According to the dbSNP database (https: / / www.ncbi.nlm.nih.gov / snp / term=) published by the NCBI (National Center for Biotechnology Information) ), CYP2C9*3 (rs1057910, c.1057A>C) and VKORC1 (rs9923231, c.-1639G>A) SNP site information, design multiple specific primers for CYP2C9 and VKORC1 gene polymorphism sites And specific fluorescent probes, specific primers are designed at both ends of the mutation site of the detected gene, and the specific fluorescent probe covers the mutation site of the detected gene. After a large number of experimental screening, the final product with high sensitivity and good specificity Three pairs of specific primers for amplifying CYP2C9*2 locus, CYP2C9*3 locus and VKORC1 locus and specific fluorescent probe CYP2C9* for detecting CYP2C9*2 locus...

Embodiment 2

[0154] Example 2 Verification of CYP2C9 and VKORC1 gene polymorphism detection results

[0155] The 250 clinical samples to be tested in Example 1 were sequenced using the gold standard sequencing method while using the above primers and probes for qPCR testing. The results showed that the genotype obtained by the gold standard sequencing method for each sample to be tested was consistent with The genotypes obtained by the method in Example 1 were consistent, with 0 missed detection and an accuracy of 100%.

[0156] The minimum detection limit of the primer and probe composition of the present invention is detected, and the steps are as follows:

[0157] 1. Randomly select 10 cases of DNA samples extracted in Example 1, and dilute their concentrations to 1ng / ul, 0.5ng / ul, and 0.25ng / ul respectively. The DNA templates of 3 concentrations of each sample were loaded into 3 replicate PCR wells respectively, and the loading volume was 4ul, and the minimum detection limit test was ...

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Abstract

The invention discloses a primer and probe composition for detecting polymorphism of human CYP2C9 and VKORC1 genes, a kit and application. The primer and probe composition comprises three pairs of specific primers for amplifying CYP2C9*2, CYP2C9*3 and VKORC1 sites, and three specific fluorescent probes. The primers and the probes, disclosed by the invention, have high sensitivity, strong specificity and strong anti-interference capability; a manner combining an asymmetric PCR (Polymerase Chain Reaction) amplification and fluorescent probe melting curve analysis technologies is used for detecting the gene polymorphism; different gene types can be effectively distinguished according to the quantity and Tm value of a melting peak; a result is convenient, clear and objective to judge and read.Single-tube sampling can be used for simultaneously detecting 6 mutation types of 3 gene sites; the primer and probe composition is simple and convenient to operate and the detection efficiency is improved; a large batch of samples can be detected and clinical operation is facilitated.

Description

technical field [0001] The invention relates to a primer probe composition, kit and application for detecting human CYP2C9 and VKORC1 gene polymorphisms, belonging to the technical field of molecular biology. Background technique [0002] Warfarin is an indirect-acting coumarin-based oral anticoagulant. It inhibits the synthesis of coagulation factors II, VII, IX, and X by inhibiting vitamin K in liver cells, thereby exerting an anticoagulant effect. It is the most widely used oral anticoagulant in clinical practice. Drugs, which can prevent the formation and development of thrombus, are suitable for the prevention and treatment of thromboembolic diseases, such as the treatment of thromboembolic phlebitis, reducing the morbidity and mortality of pulmonary embolism, reducing major surgical operations, rheumatic heart disease, and hip fixation The incidence of venous thrombosis in surgery, artificial heart valve replacement surgery, etc. And can be used as an adjuvant drug fo...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6883C12Q1/686C12N15/11
CPCC12Q1/686C12Q1/6883C12Q2600/106C12Q2600/156C12Q2527/107C12Q2563/107
Inventor 孙秀莲苏桂锋李轶群
Owner SHANDONG VIGENE BIOSCI
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