Looking for breakthrough ideas for innovation challenges? Try Patsnap Eureka!

Sequencing data processing method and device

A technology for sequencing data and processing methods, applied in the field of biological information, can solve the problems of slow comparison speed and low efficiency, and achieve the effect of reducing the time required for comparison and assembly

Active Publication Date: 2022-05-03
BEIJING NOVOGENE TECH CO LTD
View PDF4 Cites 0 Cited by
  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0006] Embodiments of the present invention provide a method and device for processing sequencing data, to at least solve the problem of slow comparison speed and low efficiency due to the need to use a large amount of resources and time to complete genome comparison in the process of genome assembly in the prior art. technical problem

Method used

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
View more

Image

Smart Image Click on the blue labels to locate them in the text.
Viewing Examples
Smart Image
  • Sequencing data processing method and device
  • Sequencing data processing method and device
  • Sequencing data processing method and device

Examples

Experimental program
Comparison scheme
Effect test

Embodiment Construction

[0025] In order to enable those skilled in the art to better understand the solutions of the present invention, the following will clearly and completely describe the technical solutions in the embodiments of the present invention in conjunction with the drawings in the embodiments of the present invention. Obviously, the described embodiments are only It is an embodiment of a part of the present invention, but not all embodiments. Based on the embodiments of the present invention, all other embodiments obtained by persons of ordinary skill in the art without making creative efforts shall fall within the protection scope of the present invention.

[0026] It should be noted that the terms "first" and "second" in the description and claims of the present invention and the above drawings are used to distinguish similar objects, but not necessarily used to describe a specific sequence or sequence. It is to be understood that the data so used are interchangeable under appropriate ...

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

PUM

No PUM Login to View More

Abstract

The invention discloses a sequencing data processing method and device. Among them, the method includes: splitting the three-generation sequencing data to obtain at least one sub-sequencing data; comparing any sub-sequencing data to the corresponding reference genome to obtain the comparison result corresponding to any sub-sequencing data; For the result, get the merged result. The invention solves the technical problem that a large amount of resources and time are needed to complete the comparison of the genome in the process of genome assembly in the prior art, resulting in slow comparison speed and low efficiency.

Description

technical field [0001] The present invention relates to the technical field of biological information, in particular to a method and device for processing sequencing data. Background technique [0002] With the popularization of high-throughput sequencing technology, the genome maps of more and more species have been cracked. The genome is generally at the draft level, and generally consists of thousands to tens of thousands of scaffold sequences. [0003] At present, the commonly used software for connecting scaffolds based on the third-generation PacBio sequencing data is SSPACE-LongRead. It first uses blasr software to compare all reads to the genome, and obtains the comparison results of all reads and genome draft scaffolds. Then select the reads alignment results that can be aligned to multiple scaffolds at the same time, and then these third-generation sequencing reads connect two or more scaffolds into a long sequence at the alignment position and alignment direction...

Claims

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

Application Information

Patent Timeline
no application Login to View More
Patent Type & Authority Patents(China)
IPC IPC(8): G16B25/00
Inventor 许国良张锦波李季蒋智李瑞强
Owner BEIJING NOVOGENE TECH CO LTD
Who we serve
  • R&D Engineer
  • R&D Manager
  • IP Professional
Why Patsnap Eureka
  • Industry Leading Data Capabilities
  • Powerful AI technology
  • Patent DNA Extraction
Social media
Patsnap Eureka Blog
Learn More
PatSnap group products

Browse by: Latest US Patents, China's latest patents, Technical Efficacy Thesaurus, Application Domain, Technology Topic, Popular Technical Reports.

© 2024 PatSnap. All rights reserved.Legal|Privacy policy|Modern Slavery Act Transparency Statement|Sitemap|About US| Contact US: help@patsnap.com