Molecular marker for prenatal noninvasive diagnosis of fetuses with cleft lip and palate, neural tube malformation and congenital heart disease and application of molecular marker
A technology for congenital heart disease and neural tube defects, applied in the field of biomedicine, can solve the problem of lack of diagnostic molecular markers and other problems
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Embodiment 1
[0047] Example 1 Isolation of exosomes from the peripheral blood of mothers with cleft lip and palate and piRNA sequencing.
[0048] 1. Separation of plasma.
[0049] Collect the whole blood sample, put it in an EDTA anticoagulant tube, mix it upside down gently, use a 4°C low-temperature centrifuge, centrifuge at 1600×g for 10 minutes, collect the supernatant (plasma) into a new EP tube, and centrifuge at 16000×g After 10 minutes to remove cell debris, the plasma was divided into several centrifuge tubes.
[0050] 2. Isolation and identification of exosomes.
[0051] Plasma exosomes were isolated by ultracentrifugation. The separation method is as follows: centrifuge at 10,000×g for 1 hour at 4°C, transfer the supernatant to a new ultrahigh-speed centrifuge tube, and centrifuge at 100,000×g for 4 hours at 4°C. Discard the supernatant and resuspend the exosomes with 100 μl cold PBS. The isolated exosome particles were identified using three standard methods (transmission e...
Embodiment 2
[0058] Example 2 The quantitative PCR method was used to verify the differentially expressed piRNAs in the exosomes of pregnant women with cleft lip and palate.
[0059] 1. Design and synthesis of piRNA primers.
[0060] According to the sequence of the target gene, piRNA primers were designed and synthesized by Shanghai Sangon Bioengineering Co., Ltd. The housekeeping gene selects U6. The forward primer of hsa-piR-020492 gene is 5'-GGGGCGGCGGCGGCGGTG-3' (SEQ ID NO.1); the forward primer of hsa-piR-016792 gene is 5'-CCTCCCAAAGTGCTGGGATTACAG-3' (SEQ ID NO.2); The forward primer of hsa-piR-009228 gene is 5'-TAGTTGAACATGGGTCAGTCGGTCC-3' (SEQ ID NO.3); the forward primer of hsa-piR-001311 gene is 5'-ATTGGTGGTTCAGTGGTAGAATTCTCGC-3' (SEQ ID NO.4); The forward primer of hsa-piR-004993 gene is 5'-TCGCGAGTTCAAATCTCGCTGG-3' (SEQ ID NO.5); the forward primer of hsa-piR-016659 gene is 5'-CCCCCCACTGCTAAATTTGACTGG-3' (SEQ ID NO.6); The forward primer of the hsa-piR-016945 gene is 5'-CGGC...
Embodiment 3
[0064] Example 3 The sample size was expanded to verify the piRNAs screened by the above method in the exosomes of pregnant women with cleft lip and palate.
[0065] On the basis of Example 2, continue to expand the number of samples, increase cleft lip and palate pregnant women and healthy control pregnant women to 50 cases each, and further verify the six piRNAs screened above (hsa-piR-001101, hsa-piR-009228, hsa - the possibility of piR-016659, hsa-piR-019912, hsa-piR-020388 and hsa-piR-020496) as molecular markers. The results showed that 4 piRNAs (hsa-piR-009228, hsa-piR-016659, hsa-piR-019912, and hsa-piR-020496) were still differentially expressed after being verified by 50 pairs of samples, so they were included in subsequent studies. The expression of the other 2 piRNAs (hsa-piRNA-001101 and hsa-piR-020388) had no statistical difference, as Figure 5 shown.
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