Application of biomarker in predicting sensitivity of bevacizumab
A bevacizumab and marker technology, applied in the field of biomedicine, can solve problems such as the difficulty of predicting the sensitivity of bevacizumab
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Embodiment 1
[0066] Example 1, screening prediction marker
[0067] 1, data download and experimental object
[0068] Download gene expression data from GSE60331 from the GEO database, the specific link is https: / / www.ebi.ac.uk / ArrayExpress / experiments / e-geod-60331 / ? Query = GSE60331 +.
[0069] In the study of the above database, 59 patients retained tumor tissue before receiving Bevacu, and receiving Total Mesorectal Excision, TME surgery, according to the patient's treatment, according to DWORAK / The five levels divided the patient into two groups: Complete Remission (CR), also known as the response to R, the treatment failure group (Non-responder, NR) is also known as unreceptive in the database Marked as NR.
[0070] In the end, 21 samples were collected, and no reactors were 26 samples; in addition, the three samples of NJ 04 / 003T1, RVS 09 / 002M, NJ 04 / 003W3 were repeated to exclude batch effects. Eventually NR: R = 27: 23.
[0071] 2, data analysis
[0072] After obtaining the s...
Embodiment 2
[0075] Example 2, verification marker, marker combination prediction effect
[0076] The subject working curve (ROC), calculates AUC value, sensitivity, and specificity, and determines prediction efficiency of markers. KCNT2, FLJ33534, CACHD1, KCNT2 + FLJ33534, KCNT2 + CACHD1, FLJ33534 + CACHD1 ROC curve sequentially Figure 2-7 As shown, the AUC value is shown in Table 2.
[0077] Table 2. AUC value of marker or marker combination
[0078] Marker / combination AUC KCNT2 0.724637681 FLJ33534 0.782608696 Cachd1 0.787439614 Cachd1_kcnt2 0.790660225 Cachd1_flj33534 0.896940419 KCNT2_FLJ33534 0.843800322
[0079] The above results illustrate the markers provided by the present invention to predict the sensitivity of colorectal cancer in patients with pegs, and have high clinical application value.
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