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Screening method and system for key molecules influencing medical outcome variables, terminal and storage medium

A screening method and outcome technology, applied in the field of high-throughput sequencing, can solve problems such as non-occurrence, and achieve the effect of improving the efficiency of clinical transformation and solving instability and poor repeatability.

Active Publication Date: 2021-12-31
中国人民解放军海军军医大学第三附属医院
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  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

At present, the method of dimensionality reduction mainly relies on annotations of public databases, but there is no significant and stable effect on a specific outcome variable in medicine (for example, whether the patient relapses, whether the patient dies, drug sensitivity, etc.) Data Dimensionality Reduction Methods

Method used

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  • Screening method and system for key molecules influencing medical outcome variables, terminal and storage medium
  • Screening method and system for key molecules influencing medical outcome variables, terminal and storage medium
  • Screening method and system for key molecules influencing medical outcome variables, terminal and storage medium

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0060] Example 1 Screening of long non-coding RNAs that have a significant and stable impact on the disease-free survival time of patients with cholangiocarcinoma

[0061] Taking COX proportional hazards regression as an example, 927 long-chain non-coding RNAs that were significantly highly expressed in cholangiocarcinoma tissues were screened from 61 cholangiocarcinoma transcriptome sequencing samples. Behavioral gene name, listed as the sample name, and the matrix is ​​the expression level of the gene in the sample), to screen for long-chain non-coding RNA (ie, key molecules) that have a significant and stable effect on the disease-free survival time of patients with cholangiocarcinoma.

[0062] Executable program codes are stored in the memory of a certain intelligent terminal, and the processor of the intelligent terminal reads the executable program codes stored in the memory to execute the following key molecules affecting outcome variables in medicine (i.e. long-chain no...

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PUM

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Abstract

The invention provides a screening method and system for key molecules influencing medical outcome variables, an intelligent terminal and a computer readable storage medium. According to the application, on the basis of a regression algorithm with repeated placement stratified random sampling, dimensionality reduction of the high-throughput sequencing data can be realized, and then key molecules which have obvious influence on specific result variables in the high-throughput sequencing data are accurately screened out. In addition, the invention further provides a method for evaluating the stability of the regression model, stability evaluation of the key molecules is achieved, namely, the stability of the influence of the independent variable on the result variable is evaluated by calculating the stability coefficient gamma of the independent variable x, quantification of the influence stability of the key molecules is achieved, and the method is simple, effective and high in practicability. According to the technical scheme, the technical problems of instability and poor repeatability of a regression model in medicine are solved, and the clinical conversion efficiency of high-throughput sequencing big data is improved.

Description

technical field [0001] The invention relates to the field of high-throughput sequencing, in particular to an algorithm for screening key molecules affecting outcome variables in medicine based on high-throughput sequencing data. Background technique [0002] With the development of high-throughput sequencing technology (High-throughput sequencing technology), it has become increasingly common to explore the developmental process and tumorigenesis with the help of high-throughput sequencing technology. High-throughput sequencing technologies mainly include genome sequencing, transcriptome sequencing, proteome sequencing, modified proteome sequencing, and metabolome sequencing. High-throughput sequencing data is a cross-sectional analysis of genetic information, reflecting the mutation, modification or expression status of all genetic material in an organism at a certain point in time. For example, human high-throughput sequencing is the analysis of all genes in the human bod...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): G16B20/30G16B25/10G16B40/00G06F17/18
CPCG16B25/10G16B20/30G16B40/00G06F17/18Y02A90/10
Inventor 李风伟王葵沈锋夏勇阎振林薛辉杨钊张磊武烨晔张世超庄国琨徐新飞施晓冬李尧胡志亮
Owner 中国人民解放军海军军医大学第三附属医院
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