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Biopolymer marker indicative of disease state having a molecular weight of 1211 daltons

a biopolymer and molecular weight technology, applied in the field of disease states, can solve the problems of not working, eam when used as free chemicals to embed analyte molecules, complicated, etc., and achieve the effect of maximizing the diversity of biopolymers

Inactive Publication Date: 2006-09-21
JACKOWSKI GEORGE +4
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

This approach enables the identification of disease-specific marker sequences, facilitating early diagnosis and prevention of conditions like Syndrome X, as well as rapid diagnosis of acute events such as heart attacks and strokes, by maximizing the detectable diversity of biopolymers.

Problems solved by technology

On the contrary, the '396 patent requires a complicated analysis by a highly trained individual to determine disease state versus the perception of non-disease or normal physiology.
Furthermore, note that some EAM when used as free chemicals to embed analyte molecules as described for the MALDI process will not work (i.e., they do not promote molecular desorption, thus they are not suitable matrix molecules).
Retentate chromatography is limited, however, by the fact that if unfractionated body fluids, e.g. blood, blood products, urine, saliva, and the like, along with tissue samples, are applied to the adsorbent surfaces, the biopolymers present in the greatest abundance will compete for all the available binding sites and thereby prevent or preclude less abundant biopolymers from interacting with them, thereby reducing or eliminating the diversity of biopolymers which are readily ascertainable.

Method used

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  • Biopolymer marker indicative of disease state having a molecular weight of 1211 daltons
  • Biopolymer marker indicative of disease state having a molecular weight of 1211 daltons
  • Biopolymer marker indicative of disease state having a molecular weight of 1211 daltons

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Experimental program
Comparison scheme
Effect test

Embodiment Construction

[0053] Serum samples from individuals were analyzed using Surface Enhanced Laser Desorption Ionization (SELDI) using the Ciphergen PROTEINCHIP system. The chip surfaces included, but were not limited to IMAC-3-Ni, SAX2 surface chemistries, gold chips, and the like.

[0054] Preparatory to the conduction of the SELDI MS procedure, various preparatory steps were carried out in order to maximize the diversity of discernible moities educable from the sample. Utilizing a type of micro-chromatographic column called a C18- ZIPTIP available from the Millipore company, the following preparatory steps were conducted. [0055] 1. Dilute sera in sample buffer; [0056] 2. Aspirate and dispense ZIP TIP in 50% Acetonitrile; [0057] 3. Aspirate and dispense ZIP TIP in Equilibration; solution; [0058] 4. Aspirate and Dispense in serum sample; [0059] 5. Aspirate and Dispense ZIP TIP in Wash solution; [0060] 6. Aspirate and Dispense ZIP TIP in Elution Solution.

[0061] Illustrative of the various buffering co...

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Abstract

The instant invention involves the use of a combination of preparatory steps in conjunction with mass spectroscopy and time-of-flight detection procedures to maximize the diversity of biopolymers which are verifiable within a particular sample. The cohort of biopolymers verified within such a sample is then viewed with reference to their ability to evidence at least one particular disease state; thereby enabling a diagnostician to gain the ability to characterize either the presence or absence of said at least one disease state relative to recognition of the presence and / or the absence of said biopolymer.

Description

CROSS REFERENCE TO RELATED APPLICATION [0001] This application is a continuation of application Ser. No. 09 / 845,731, filed on Apr. 30, 2001, the contents of which is herein incorporated by reference.FIELD OF THE INVENTION [0002] This invention relates to the field of characterizing the existence of a disease state; particularly to the utilization of mass spectroscopy to elucidate particular biopolymer markers indicative of disease state, and most particularly to specific biopolymer sequences having a unique relationship to at least one particular disease state. BACKGROUND OF THE INVENTION [0003] Methods utilizing mass spectrometry for the analysis of a target polypeptide have been taught wherein the polypeptide is first solubilized in an appropriate solution or reagent system. The type of solution or reagent system, e.g., comprising an organic or inorganic solvent, will depend on the properties of the polypeptide and the type of mass spectrometry performed and are well known in the ...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): G01N33/53G01N33/00G01N33/68
CPCY10T436/24G01N33/6893
Inventor JACKOWSKI, GEORGETHATCHER, BRADMARSHALL, JOHNYANTHA, JASONVREES, TAMMY
Owner JACKOWSKI GEORGE
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