Recombinant alphavirus-based vectors with reduced inhibition of cellular macro-molecular synthesis

Abstract

Isolated nucleic acid molecules are disclosed, comprising an alphavirus nonstructural protein gene which, when operably incorporated into a recombinant alphavirus particle, eukaryotic layered vector initiation system, or RNA vector replicon, has a reduced level of vector-specific RNA synthesis, as compared to wild-type, and the same or greater level of proteins encoded by RNA transcribed from the viral junction region promoter, as compared to a wild-type recombinant alphavirus particle. Also disclosed are RNA vector replicons, alphavirus vector constructs, and eukaryotic layered vector initiation systems which contain the above-identified nucleic acid molecules.

Description

CROSS-REFERENCE TO RELATED APPLICATION[0001]This application is a continuation of U.S. Ser. No. 10 / 391,441, filed Mar. 17, 2003, pending, which is a continuation of U.S. Ser. No. 09 / 507,362, filed Feb. 18, 2000, now U.S. Pat. No. 6,592,874, issued Jul. 15, 2003, which is a division of U.S. Ser. No. 08 / 944,465, filed Oct. 6, 1997, now U.S. Pat. No. 6,451,592, issued Sep. 17, 2002, which is a continuation-in-part of U.S. Ser. No. 08 / 833,148, filed Apr. 4, 1997, abandoned, which is a continuation-in-part of U.S. Ser. No. 08 / 679,640, filed Jul. 12, 1996, abandoned, which is a continuation-in-part of U.S. Ser. No. 08 / 668,953 filed Jun. 24, 1996, abandoned, which is a continuation-in-part of U.S. Ser. No. 08 / 628,594, filed Apr. 5, 1996, abandoned. Each reference is incorporated herein in its entirety.[0002]This application incorporates by reference the contents of a 64 kb text file created on Jul. 28, 2010 and named “PAT051264_US_CNT02seqlist.txt,” which is the sequence listing for this a...

AI Technical Summary

Benefits of technology

[0014]Briefly stated, the present invention provides RNA vector replicons, alphavirus vector constructs, eukaryotic layered vector initiation systems and recombinant alphavirus particles which exhibit reduced, delayed, or no inhibition of cellular macromolecular synthesis (e.g., protein or RNA synthesis), thereby permitting the use of these vectors for protein expression, gene therapy and the like, with reduced, delayed, or no development of CPE or cell death. Such vectors may be constructed from a wide variety of alphaviruses (e.g., Semliki Forest virus, Ross River virus, Venezuelan equine encephalitis virus or Sindbis virus), and designed to express numerous heterologous sequences (e.g., a sequence corresponding to protein, a sequence corresponding to antisense RNA, a sequence corresponding to non-coding sense RNA, or a sequence corresponding to ribozyme).

[0015]Within one aspect of the invention, isolated nucleic acid molecules are provided comprising an altered alphavirus nonstructural protein gene which, when operably incorporated into a recombinant alphavirus, increases the time required to reach 50% inhibition of host-cell directed macromolecular synthesis following expression in mammalian cells, as compared to a wild-type alphavirus. As utilized within the context of the present invention, “altered alphavirus nonstructural protein gene” refers to a gene which, when operably incorporated into an alphavirus RNA vector replicon, recombinant alphavirus particle, or eukaryotic layered vector initiation system, produces the desired phenotype (e.g., reduced, delayed or no inhibition of cellular macromolecular synthesis). Such altered alphavirus nonstructural protein genes will have one or more nucleotide substitutions, deletions, or insertions, which alter the nucleotide sequence from that of the wild-type alphavirus gene. The gene may be derived either artificially (e.g., from directed selection procedures; see Example 2 below), or from naturally occurring viral variants (see Example 1 below). In addition, it should be understood that when the isolated nucleic acid molecules of the present invention are incorporated into an alphavirus RNA vector replicon, recombinant alphavirus particle, or eukaryotic layered vector initiation system as discussed above, that they may, within certain embodiments, substantially increase the time required to reach 50% inhibition of host-cell directed macromolecular synthesis, up to and including substantially no detectable inhibition of host-cell directed macromolecular synthesis (over any period of time). Assays suitable for detecting percent inhibition of host-cell directed macromolecular synthesis include, for example, that described within Example 1.

Problems solved by technology

In general, infection with this group can result in permanent sequelae, including behavior changes and learning disabilities, or death.

With respect to this group, although serious epidemics have been reported, infection is in general self-limiting, without permanent sequelae.

One difficulty, however, with the above-referenced vectors is that inhibition of host cell-directed macromolecular synthesis (i.e., protein or RNA synthesis) begins within a few hours after infection and cytopathic effects (CPE) occur within 12 to 16 hours post infection (hpi).

Images