Hybridization probe for detecting von hippel-lindau (VHL) gene large deletion and detection method and kit

A technology of hybridization probes and large fragments, which is applied in the fields of biochemical equipment and methods, DNA/RNA fragments, and microorganism determination/inspection. , to achieve the effect of easy promotion, easy observation and good detection effect

Inactive Publication Date: 2015-12-02
PEKING UNIV FIRST HOSPITAL
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

SoμthernBlot and MLPA have the defects that the detection method is cumbersome and expensive, and is not suitable for clinical application
Although RT-PCR and MPQFM-PCR are simple to operate, their diagnostic efficiency is limited
Fluorescence in situ hybridization has the characteristics of high diagnostic efficiency and suitable for clinical promotion in diagnosing large fragment deletions of genes. Therefore, we can use fluorescence in situ hybridization to diagnose large fragment deletions of VHL genes and solve the existing large fragment deletions of VHL genes. The problem of limited detection efficiency and difficult promotion

Method used

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  • Hybridization probe for detecting von hippel-lindau (VHL) gene large deletion and detection method and kit
  • Hybridization probe for detecting von hippel-lindau (VHL) gene large deletion and detection method and kit
  • Hybridization probe for detecting von hippel-lindau (VHL) gene large deletion and detection method and kit

Examples

Experimental program
Comparison scheme
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Embodiment 1

[0059] The preparation of embodiment 1 hybridization probe

[0060] 1. Screening of hybridization probe gene sequences

[0061] The VHL gene sequences used as FISH probes were screened in the human genome, and the probe sequences with both specificity and feasibility were selected.

[0062] The VHL gene is located in the autosome 3p25-26 region and contains three exons. Retrieve all sequences containing the VHL gene in the databases of MCSCgenomebrowser, NCBICloneRegistry, and EnsemblGenomeBrowser, and screen the optimal hybridization probe sequence for the above exons, and number it as 1 Exon No. VHL-Exon1, Exon No. 2 VHL-Exon2, Exon No. 3 VHL-Exon3.

[0063] 2. Preparation of hybridization probes

[0064] 2.1 Prepare the amplification reaction template.

[0065] Collect 3ml of blood samples from healthy persons, use the blood genome DNA extraction kit (purchased from TIANGEN company, item number DP304) to extract the DNA in the blood, the operation process is carried out ...

Embodiment 2

[0108] The detection of embodiment 2 blood sample

[0109] Blood samples were detected using the hybridization probe prepared in Example 1.

[0110] 1. Preparation of cell smears

[0111] Extract 3ml of peripheral blood, treat the peripheral blood with lymphocyte separation medium, and obtain the cell layer. After the cell layer is rinsed and treated with hypotonicity, it is fixed with fixative solution, and the droplet is made into a cell smear. The specific operation steps are as follows:

[0112] 1.1 Preparation of cell suspension

[0113] Take 3ml of lymphocyte separation solution into a 15ml plastic tube, mix 3ml of peripheral blood with 1.5ml of PBS buffer, then slowly add to the lymphocyte separation solution along the wall of the plastic tube, and centrifuge at a speed of 2500r / min After 30 min, the flocculent suspended cells located in the middle part were sucked out to obtain a cell suspension.

[0114] 1.2 Treatment of cells and dripping

[0115] Place the obtai...

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Abstract

The invention discloses a hybridization probe for detecting von hippel-lindau (VHL) gene large deletion and a detection method and a kit, which relate to the field of gene detection, wherein the hybridization probe is marked with fluorescence signals, and is prepared from probe primers with nucleotide sequences which is showed in sequence identifier number 1-6 (SEQ ID NO.1-6). The detection method comprises steps: cell smears are prepared from collected samples to be detected, hybridization probe is arranged in a hybridization solution to have a hybridization reaction with cell and obtain hybridization products, the hybridization products are washed, dyeing of cell nucleus are processed to obtain cell smears after nuclear staining, the cell smears after nuclear staining are observed through a fluorescence microscope, thereby judging whether deoxyribose nucleic acids (DNA) of the samples to be detected happen VHL gene large deletion. The kit comprises the hybridization probe. The hybridization probe is strong in specificity, high in sensitivity, simple in detection method and low in cost of the kit, and can rapidly and accurately detect VHL gene large deletion.

Description

technical field [0001] The invention relates to the field of gene detection, in particular to a hybridization probe, a detection method and a kit for detecting large fragment deletion of VHL gene. Background technique [0002] The VHL gene (MIM No. 608537) is located at 3p25-26, with a full length of 10KD, including three exons and two introns, and can be transcribed to form two mRNAs. The mRNA containing three exon transcripts translates the p30 (213 amino acids) and p19 (159 amino acids) proteins. p19 is an isoform formed by the transcription of the second transcription initiation site (codon 54) of VHL gene, and has similar functions to p30. [0003] There are various ways of VHL gene mutation, including point mutation, large fragment deletion, small fragment deletion or insertion, splicing site mutation and so on. At present, the most commonly used method for detecting VHL gene mutations is direct PCR sequencing, and the diagnosis rate is 38% to 80%. Large fragments a...

Claims

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Application Information

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IPC IPC(8): C12Q1/68C12N15/11
CPCC12Q1/6883C12Q2600/156
Inventor 龚侃彭双鹤李腾王江宜宁向辉
Owner PEKING UNIV FIRST HOSPITAL
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