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DNA frameworks for circular RNA overexpression and their applications

An overexpression and circular technology, applied in the field of DNA framework, can solve the problems of low overexpression efficiency and achieve the effect of easy construction, simple design, and various choices

Active Publication Date: 2021-06-25
浙江自贸区锐赛生物医药科技有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

This method is not suitable for the overexpression of artificially designed circular RNA
In 2014, Liang used the upstream and downstream sequence research of hsa_circ_0001727 to optimize and construct a circRNA expression framework, but the expression framework has limitations, and it is only effective for the overexpression of some endogenous circRNAs, and the overexpression efficiency is low

Method used

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  • DNA frameworks for circular RNA overexpression and their applications
  • DNA frameworks for circular RNA overexpression and their applications
  • DNA frameworks for circular RNA overexpression and their applications

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0027] Example 1: construction of has_circ_0001727 overexpression vector

[0028] 1. Sequence design of hsa_circ_0001727 overexpression framework:

[0029] The linear DNA sequence encoding the hsa_circ_0001727 circular RNA was obtained from the circBase database. The sequence is shown in SEQ ID NO.3.

[0030] According to the above-mentioned general circRNA overexpression DNA framework sequence design principle, the DNA sequence of hsa_circ_0001727 queried is replaced by [N] in the sequence of formula I n , to obtain the dedicated overexpression framework DNA sequence of hsa_circ_0001727, as shown in SEQ ID NO.4.

[0031] And further, in other embodiments, such as figure 1 As shown, n can also adopt 2, 3, 4, 5, 10, 20, 30, 40, 50, 100, 200, 300, 400, 500, 1000, 2000, 3000 or even more multiples, which can be the same N or a different N.

[0032] 2. Submit the dedicated overexpression framework DNA sequence of hsa_circ_0001727 to Nanjing GenScript Company for sequence synt...

Embodiment 2

[0073] Example 2: qPCR detection of hsa_circ_0001727 overexpression effect in 293T cells after hsa_circ_0001727 overexpression plasmid transfection

[0074] 1, qPCR primer design and synthesis

[0075] divergent primer-F: CAGGTCAAGTTCATGGACCTG

[0076] divergent primer-R: ATTCAGACTTACCTGAAGTA

[0077] The primer sequences were synthesized by Shanghai Huada Gene Company.

[0078] 2. 24 hours before transfection, digest 293T cells in the logarithmic growth phase with trypsin, pass to a six-well plate, 37°C, 5% CO 2 Cultured in an incubator. After 24 hours, when the cell density reaches 70%-80%, it can be used for transfection.

[0079] 3. Replace the cell culture medium with serum-free medium before transfection.

[0080] 4. Add 25ug of the prepared hsa_circ_0001727 overexpression plasmid DNA solution to a sterilized centrifuge tube, mix well with the corresponding volume of Opti-MEM, and adjust the total volume to 1.5ml.

[0081] 5. Shake Lipofectamine 2000 reagent gently...

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Abstract

The invention relates to a DNA framework for circular RNA overexpression and its application. The artificially synthesized DNA framework sequence is inserted into eukaryotic expression vectors, lentiviral vectors, adenoviral vectors, and adeno-associated viral vectors to form circRNA dedicated expression vector. The DNA framework sequence and its corresponding expression vector involved in the present invention can be widely used in the expression of various circRNAs, and provide a favorable tool for studying the function and mechanism of circRNAs and further developing gene therapy drugs based on circRNAs.

Description

[technical field] [0001] The present invention relates to a DNA framework for circular RNA overexpression and its application. [Background technique] [0002] Circular RNA (circular RNA, circRNA) is a new type of RNA that is different from traditional linear RNA. It does not have the 5' end cap and 3' end poly(A) tail in traditional linear RNA, but exists in a closed circular structure. . Studies have shown that circular RNAs are mainly produced through atypical variable shear processing, and widely exist in various biological cells. Spatiotemporal specificity and other characteristics. Studies on circRNA and diseases have shown that circRNA is related to the occurrence and progression of tumors, neurodevelopment, atherosclerosis, myotonic dystrophy and other diseases. In addition, studies have found that stable circRNAs can be detected in human saliva and blood. These characteristics make circular RNAs have broad prospects for the development and application of new disea...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12N15/79C12N15/867C12N15/67C12N15/113
CPCC12N15/113C12N15/67C12N15/79C12N15/86C12N2310/10C12N2330/51C12N2740/15043
Inventor 罗卫峰张腾谭圆圆吴翠芳韩慧
Owner 浙江自贸区锐赛生物医药科技有限公司