Molecular dynamics method for predicting optimal isomeride structure of surfactant
A surfactant and molecular dynamics technology, applied in the microscopic field of molecular dynamics simulation research, can solve the problems of difficulty in isomers, long experimental period, and difficulty in directional synthesis of isomers by surfactants. To achieve the effect of shortening the experimental period
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[0071] Step 1: Build the single molecular structure model of surfactant and oil
[0072] (1) Use GaussView software to draw decane molecules and surfactant C 12 - Four isomers of NPDS x-C 12 - NPDS (x = 1, 2, 3, 4, x refers to the substitution position of nonylphenol group in dodecylsulfonate) molecular geometry (such as figure 1 shown), save as a coordinate file in .mol2 format;
[0073] (2) Use Gaussian software at the B3LYP / 6-31g* level to perform geometrical optimization calculations on the configurations of x-C12-NPDS, decane, and water molecules constructed in step 1 to obtain the best single-molecule configurations under vacuum conditions. Conformation, as the basic molecular unit for constructing multimolecular aggregation models.
[0074] Step 2: Establish single-molecule force field information for simulation calculations to obtain GAFF force fields for organic molecule calculations;
[0075] (1) Use the Antechamber program and the acpype.py script to obtain the ...
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