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Data processing method, device and electronic equipment for gene detection

A genetic detection and data processing technology, applied in the field of data processing, can solve the problems of inconvenient operation and low efficiency of genetic detection process, and achieve the effect of improving efficiency and simplifying steps

Active Publication Date: 2022-04-22
BEIJING USCI MEDICAL DEVICES CO LTD
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Problems solved by technology

[0004] The above process involves multiple steps, the operation is inconvenient, and the efficiency of the genetic testing process is low

Method used

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  • Data processing method, device and electronic equipment for gene detection
  • Data processing method, device and electronic equipment for gene detection
  • Data processing method, device and electronic equipment for gene detection

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Embodiment Construction

[0073] In order to make the purpose, technical solutions and advantages of the present invention clearer, the technical solutions in the present invention will be clearly and completely described below in conjunction with the accompanying drawings in the present invention. Obviously, the described embodiments are part of the embodiments of the present invention , but not all examples. Based on the embodiments of the present invention, all other embodiments obtained by persons of ordinary skill in the art without creative efforts fall within the protection scope of the present invention.

[0074] Combine below Figure 1-Figure 5 The data processing method for gene detection of the present invention will be described.

[0075] figure 1 It is one of the schematic flow charts of the data processing method for gene detection provided by the present invention, such as figure 1 As shown, the method includes:

[0076] Step 110, obtaining the sequence to be detected.

[0077] Wher...

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Abstract

The present invention provides a data processing method, device and electronic equipment for gene detection, wherein the method includes: obtaining a sequence to be detected; inputting the sequence to be detected into a gene detection model, and obtaining a gene detection result output by the gene detection model; Wherein, the sequence to be detected is obtained by the following methods: obtaining the original sequence; wherein, the original sequence includes at least one read sequence; determining the sequence number corresponding to the read sequence; according to the sequence number corresponding to the The read sequence is preprocessed; and the sequence to be detected is determined according to each preprocessed read sequence. The data processing method, device and electronic equipment for gene detection provided by the present invention preprocess the corresponding read sequence according to the sequence number, without using multiple software, simplify the preprocessing steps, and improve the efficiency of the entire gene detection process. efficiency.

Description

technical field [0001] The invention relates to the technical field of data processing, in particular to a data processing method, device and electronic equipment for gene detection. Background technique [0002] Before performing data analysis on the original FASTQ (sequence format) files of next-generation sequencing, the data needs to be preprocessed to ensure that the input data for downstream analysis is clean and reliable. Especially in the field of liquid biopsy, it is necessary to use data to detect low-frequency gene mutations, and data preprocessing is particularly important at this time. Traditional data preprocessing usually includes cutting adapter sequences, cutting out low-quality sequencing and base sequences measured as N, and cutting out repetitive sequences. [0003] In the prior art, data preprocessing is usually divided into several steps: first, use Cutadapt (joiner removal software) to perform adapter removal, and then use Trimmoatic (data quality con...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): G16B30/00G16B20/00
CPCG16B30/00G16B20/00
Inventor 姬晓勇高司航单光宇伍启熹王建伟
Owner BEIJING USCI MEDICAL DEVICES CO LTD
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