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One-step multi-segment DNA molecule splicing method, kit and application thereof

A DNA molecule and kit technology, which is applied in the field of one-step multi-segment DNA molecule splicing, can solve the problems of time-consuming, limited selection of enzyme cleavage sites, and labor, and achieve the effects of reducing sample addition operations, increasing operating efficiency, and reducing operating costs.

Pending Publication Date: 2022-06-07
JIANGSU GENSCRIPT BIOTECH CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

In the prior art, the strategy of using type II restriction endonucleases to first obtain suitable DNA fragments and then digest and connect clones is good, but due to the limited selection of restriction sites, when encountering gene cloning expression vectors, multiple fragments are spliced ​​and assembled into different DNA fragments. When designing the primers, although the restriction endonuclease site sequence has been designed at both ends of the functional DNA sequence to greatly reduce the complexity of the later stage of the splicing and assembly work, there are still the following problems: The throughput of seamless cloning or multi-segment DNA fragment assembly is low, and only two complementary sequences can be spliced ​​in one operation. If multiple fragments are to be spliced, multiple rounds of experiments are required, which is time-consuming, laborious, and inefficient

Method used

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  • One-step multi-segment DNA molecule splicing method, kit and application thereof
  • One-step multi-segment DNA molecule splicing method, kit and application thereof
  • One-step multi-segment DNA molecule splicing method, kit and application thereof

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0071] Example 1: Optimization of annealing temperature in the one-step multi-segment DNA molecule splicing method of the present invention

[0072] Experimental Materials:

[0073] Select 3 double-stranded DNA sequences F1, F2, F3 with obvious inverted repeats and high GC (each DNA contains two sequences of sense strand and antisense strand, a total of 6 sequences), 10units / μLT4 PNK;

[0074] Citrate buffer (ie 20×SSC buffer) components:

[0075] 12mM Tris-HCl, 4M NaCl, 400mM C 6 H 5 Na 3 O 7 , 1.8mM EDTA, pH 7.5;

[0076] T4 Polynucleotide Kinase Buffer (T4 PNKbuffer) Components:

[0077] 70mM Tris-HCl, 10mM MgCl 2 , 9mM DTT, pH 7.5;

[0078] Among them: Tris plays the role of pH buffer, DTT plays the role of preventing T4 kinase from being oxidized by high temperature, and salt ions are necessary for the formation of DNA double strands.

[0079]Experimental operation: Pipet 2 μL of 6 DNA sequences of 0.02 nmol / μL to be spliced ​​(sequence information is as follows ...

Embodiment 2

[0090] Example 2: Comparison of the advantages and disadvantages of the one-step multi-segment DNA molecule splicing method of the present invention and the prior art two-step multi-segment DNA molecular splicing method in the success rate of splicing DNA fragments containing obvious inverted repeats

[0091] Experimental Materials:

[0092] Select 3 double-stranded DNA fragments F4, F5, F6 containing obvious inverted repeats (each DNA contains two sequences of sense strand and antisense strand, a total of 6 sequences), 10units / μL of T4 PNK;

[0093] 20×SSC buffer and T4 PNKbuffer components are the same as in Example 1;

[0094] Experimental operation:

[0095] In the prior art, the two-step multi-segment DNA molecule splicing method is as follows: Step 1: DNA fragments whose bases are complementary to each other are sequentially melted in a buffer of 20×SSC buffer and a high temperature environment of 96°C (temperature control module of a PCR instrument). , maintained for ...

Embodiment 3

[0107] Embodiment 3: Comparison of the advantages and disadvantages of the one-step multi-segment DNA molecular splicing method of the present invention and the prior art two-step multi-segment DNA molecular splicing method in the success rate of splicing DNA fragments with high GC and poly structure

[0108] Experimental Materials:

[0109] Select 3 double-stranded DNA fragments F7, F8, F9 with high GC and poly structure (each segment of DNA contains two sequences of sense strand and antisense strand, a total of 6 sequences, the sequence information is shown in Table 5 below), 10units / μL of T4 PNK enzyme;

[0110] 20×SSC buffer and T4 PNKbuffer components are the same as in Example 1;

[0111] Experimental operation:

[0112] The experimental operations of the prior art two-step multi-segment DNA molecule splicing method (scheme E) and the one-step multi-segment DNA molecule splicing method of the present invention (scheme F) are the same as those in Example 2;

[0113] t...

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Abstract

The invention discloses a one-step multi-segment DNA molecule splicing method, which comprises the following steps: mixing DNA fragments F1... Fn to be spliced, polynucleotide kinase and a reaction buffer solution to form a mixture, then carrying out gradient PCR (Polymerase Chain Reaction) on the mixture, and carrying out one-step reaction to obtain a completely spliced target DNA. According to the method, one-time splicing of multiple DNA molecules can be achieved, and the method can be used for solving the amplification problems, which cannot be solved by PCR, of primers due to reverse repetition, high and low GC and / or poly structures and the like. The invention also discloses a one-step type multi-segment DNA molecule splicing kit. According to the one-step multi-segment DNA molecule splicing method and the kit, the application effect of annealing assembly of the multi-segment DNA molecules is remarkably improved, and the method and the kit have application value for one-step integration of the multi-segment DNA molecules and splicing of difficult genes which cannot be completed through a PCR technology.

Description

technical field [0001] The invention belongs to the field of biotechnology, and relates to a one-step multi-segment DNA molecule splicing method, kit and application thereof. Background technique [0002] DNA splicing technology is one of the most important technical methods in current biological gene cloning research, and most modern molecular biology and cell biology are based on this technology. In the 1970s, researchers such as Cohen designed the first recombinant DNA molecule. The current mainstream DNA splicing method is still based on the original enzyme digestion ligation cloning method. This method has a complete operating system and involves a variety of biotechnological methods. , such as primer design, PCR, restriction endonuclease digestion, ligation transformation, etc. When there are too many actual experimental steps, the accuracy control of each step will test each practitioner, which increases the difficulty of operation. This traditional method cannot mee...

Claims

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Application Information

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IPC IPC(8): C12P19/34C12Q1/686
CPCC12P19/34C12Q1/686C12Q2527/125
Inventor 刘树度王永康陈冉孙运达
Owner JIANGSU GENSCRIPT BIOTECH CO LTD
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