Detecting probe for Pseudo-nitzchia pungens

A detection probe and quasi-rhombic technology, which is applied in the field of specific probes and oligonucleotide probes, can solve the problems of large fluctuation of detection results, difficult operation, and small number of capture probes, so as to achieve the convenience of finding and Realize the effect of good probe applicability and high stability

Inactive Publication Date: 2006-12-27
SHANGHAI JIAO TONG UNIV
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Problems solved by technology

Its main disadvantages are: first, because the length of the capture probe is only 10-30 bp, the number of capture probes that can effectively distinguish close relatives of microalgae is very small; second, it is necessary to prevent RNA degradation during the entire detection process, However, various steps such as washing and antibody reaction can easily cause RNA degradation, so the operation is difficult and the test results fluctuate greatly

Method used

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  • Detecting probe for Pseudo-nitzchia pungens
  • Detecting probe for Pseudo-nitzchia pungens

Examples

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Embodiment

[0030] Example: Qualitative and quantitative detection of Pseudomonas spinosa using S1 enzyme protection analysis for rRNA and sandwich hybridization technology

[0031] In this example, the S1 enzyme protection analysis technique and the sandwich hybridization technique are combined to realize the qualitative and quantitative detection of the marine red tide organism Pseudo-nitzschia pungens, and the steps are as follows:

[0032] 1.1 Search for the specific region of Pseudonitz spinosa rRNA and the design and synthesis of S1 enzyme protection analysis probe

[0033] By determining the 28S rRNA sequence of the large ribosomal subunit of Pseudomonas spinosa and performing multiple sequence comparisons with the rRNA sequences of other algae, it was found that the 360-430 region of the large subunit rRNA was different from other algae, and the sequence of this region was determined to be a feature Sequence; S1 enzyme protection analysis probe PUN_S1 was designed and synthesized ...

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Abstract

A detecting probe for the oxyacanthous pseudodiamond seaweed includes mutually correlative three oligonucleotide probes including S1 enzyme protecting and analyzing probe. It can be used to protect and analyze S1 enzyme and detect it by sandwich hybridization.

Description

technical field [0001] The invention relates to a group of oligonucleotide probes for algae detection, in particular to specific probes for qualitative and quantitative detection of Pseudomonas spinosa. It belongs to the field of nucleic acid detection. Background technique [0002] Pseudo-nitzschia pungens is a wide-temperate nearshore species, which is distributed in the coast of my country and is one of the main red tide organisms. In the East my country Sea of ​​China, there are many records of forming toxic red tides. Marine fisheries and mariculture have had some impact. Therefore, it is of great significance to timely, accurately and quickly detect the population dynamics of Pseudomonas spinosa in the marine environment and keep abreast of its quantity changes in the ocean. The traditional identification method of directly observing and counting with an optical microscope is cumbersome, time-consuming, and laborious, and requires the participation of experienced taxo...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/68
Inventor 李荣秀于志刚蔡青松米铁柱甄毓
Owner SHANGHAI JIAO TONG UNIV
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