Method for human PD1 gene specific knockout through CRISPR-Cas9 (clustered regularly interspaced short palindromic repeat) and sgRNA(single guide RNA)for specially targeting PD1 gene

A pgl3-u6-hpd1sg, specific technology, applied in the field of genetic engineering, can solve problems such as laborious, time-consuming and expensive antibody drugs

Active Publication Date: 2014-05-28
AOMIAO BIOTECH GUANGZHOU CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0014] Aiming at the existing problems in the use of PD1 antibody for immune detection and blocking treatment of tumors: (1) The effect of the antibody is only a temporary blocking effect; (2) There are many kinds of inhibitory receptors, how to use multiple antibodies to block

Method used

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  • Method for human PD1 gene specific knockout through CRISPR-Cas9 (clustered regularly interspaced short palindromic repeat) and sgRNA(single guide RNA)for specially targeting PD1 gene
  • Method for human PD1 gene specific knockout through CRISPR-Cas9 (clustered regularly interspaced short palindromic repeat) and sgRNA(single guide RNA)for specially targeting PD1 gene
  • Method for human PD1 gene specific knockout through CRISPR-Cas9 (clustered regularly interspaced short palindromic repeat) and sgRNA(single guide RNA)for specially targeting PD1 gene

Examples

Experimental program
Comparison scheme
Effect test

Example Embodiment

[0060] Example 1 Design and synthesis of sgRNA for specifically targeting PD1 gene in CRISPR-Cas9 knockout human PD1 gene

[0061] 1. Design of sgRNA targeting human PD1 gene:

[0062] (1) Select the 5'-GGN(19)GG sequence on the PD1 gene, if there is no 5'-GGN(19)GG sequence, 5'-GN(20)GG or 5'-N(21)GG also can.

[0063] (2) The targeted site of sgRNA on the PD1 gene is located in the exon of the gene, which is more likely to cause fragment deletion or frame-shift mutation, so as to achieve the goal of complete gene inactivation.

[0064] (3) The target site of sgRNA on the PD1 gene is located on the common exons of different splicing forms.

[0065] (4) Use BLAT in the UCSC database or BLAST in the NCBI database to determine whether the target sequence of sgRNA is unique and reduce potential off-target sites.

[0066] According to the above method, we designed a total of 180 sgRNAs targeting the human PD1 gene. The sequences are as shown in SEQ ID NO.24-203 in the sequence table.

[0067...

Example Embodiment

[0087] Example 2 Using CRISPR-Cas9 to specifically knock out the human PD1 gene (the sgRNA used to target the PD1 gene is shown in Sequence Listing 52)

[0088] 1. The linearized sequence is the pGL3-U6-sgRNA plasmid shown in SEQ ID NO.10 in the sequence table.

[0089] The digestion system and conditions are as follows:

[0090] 2μg pGL3-U6-sgRNA (400ng / μl);

[0091] 1μl CutSmart Buffer;

[0092] 1μl BsaI (NEB, R0535L);

[0093] Replenish water to 50μl, incubate at 37°C for 3 to 4 hours, shake and centrifuge at intervals to prevent droplets from evaporating to the tube cap.

[0094] After the digestion is completed, use AxyPrep PCR Clean up Kit (AP-PCR-250) to purify and recover it into 20-40μl sterile water.

[0095] 2. After denaturation and annealing, the double-stranded sgRNA oligonucleotides (the Forward oligo and Reverse oligo sequences of which are shown in SEQ ID NO. 1 and 2 in the sequence table respectively) that can be connected to the U6 eukaryotic expression vector are combin...

Example Embodiment

[0125] Example 3 Using CRISPR-Cas9 to specifically knock out the human PD1 gene (the sgRNA used to target the PD1 gene is shown in SEQ ID NO.82 in the sequence list)

[0126] 1. The linearized sequence is the pGL3-U6-sgRNA plasmid shown in SEQ ID NO.10 in the sequence table.

[0127] The digestion system and conditions are as follows:

[0128] 2μg pGL3-U6-sgRNA (400ng / μl);

[0129] 1μl CutSmart Buffer;

[0130] 1μl BsaI (NEB, R0535L);

[0131] Replenish water to 50μl, incubate at 37°C for 3 to 4 hours, shake and centrifuge at intervals to prevent droplets from evaporating to the tube cap.

[0132] After the digestion is completed, use AxyPrep PCR Clean up Kit (AP-PCR-250) to purify and recover it into 20-40μl sterile water.

[0133] 2. After denaturation and annealing, the double-stranded sgRNA oligonucleotides (the forward oligo and reverse oligo sequences of which are shown in SEQ ID NO. 3 and 4 in the sequence table) that can be connected to the U6 eukaryotic expression vector are combi...

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Abstract

The invention belongs to the field of genetic engineering, particularly relates to a method for human PD1 gene specific knockout through CRISPR-Cas9 (clustered regularly interspaced short palindromic repeat) and sgRNA(single guide RNA)for specially targeting a PD1 gene, and provides a method for human PD1 gene specific knockout through CRISPR-Cas9 and sgRNA(single guide RNA) for specially targeting a PD1 gene. The sgRNA(single guide RNA)for specially targeting a human PD1 gene, prepared through adopting the method provided by the invention, can be used for accurately targeting the human PD1 gene and realizes gene knockout; the preparing method has simple steps, the targeting performance of the sgRNA is good, and the knockout efficiency of a CRISPR-Cas9 system is high.

Description

technical field [0001] The invention belongs to the field of genetic engineering, and more specifically relates to a CRISPR-Cas9 method for specifically knocking out the human PD1 gene and an sgRNA for specifically targeting the PD1 gene. Background technique [0002] The clustered regularly interspaced short palindromic repeat system (clustered regularly interspaced short palindromic repeat; CRISPR-associated, CRISPR-Cas9) is a complex with endonuclease activity that recognizes a specific DNA sequence and cuts it at a specific site. Double-strand breaks (Double-strand breaks, DSB), in the absence of template conditions, non-homologous end joining (Non-homologous end joining, NHEJ), resulting in frameshift mutation (frameshift mutation), resulting in gene knockout ( figure 1 ). [0003] This technology has attracted widespread attention because it can quickly, easily and efficiently target any gene in the genome, and it became popular like an explosion in 2012. Cas9 has b...

Claims

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Application Information

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IPC IPC(8): C12N15/113C12N15/85
Inventor 胡边黄行许
Owner AOMIAO BIOTECH GUANGZHOU CO LTD
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