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Processing method and processing device for resequencing data

A processing method and resequencing technology, applied in the fields of electrical digital data processing, special data processing applications, instruments, etc., which can solve the problems of difficult operation, the inability of customers to re-sequence data processing, and the single processing operation function.

Active Publication Date: 2018-01-02
BEIJING NOVOGENE TECH CO LTD
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Problems solved by technology

[0005] In the prior art, when processing the resequencing data, the customer’s operation is difficult and the processing operation function is single, which makes the customer unable to process the resequencing data according to their own needs or interests. No effective solution has been proposed so far. Therefore, the main purpose of the present invention is to provide a method and device for processing resequencing data to meet the diverse processing needs of customers for resequencing data

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  • Processing method and processing device for resequencing data

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Embodiment Construction

[0026] It should be noted that, in the case of no conflict, the embodiments in the present application and the features in the embodiments can be combined with each other. The present invention will be described in detail below with reference to the accompanying drawings and examples.

[0027] In the present invention, SNP (single nucleotide polymorphism) represents single nucleotide polymorphism; INDEL (insert and deletion) represents insertion deletion; SV (structure variation) represents structural variation; CNV (copy number variation) represents copy number abnormality; PE reads (pair-end reads) sequence of double-end sequencing; the above terms are conventional terms in the art. The splice body region refers to the removal of the introns of the eukaryotic RNA and the connection of the exons to form an mRNA molecule with a continuous coding sequence.

[0028] figure 1 is a schematic structural diagram of a processing device for resequencing data according to an embodime...

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Abstract

The invention discloses a re-sequencing data processing method and processing device. The processing method includes the steps that (A) a file path of re-sequencing data of a genome is determined; (B) a re-sequencing data file including the re-sequencing data is read from a re-sequencing database by means of the file path of the re-sequencing data; (C) a query condition input by a user is received, wherein the query condition at least includes one or more following conditions of a gene name, a chromosome interval and a variation information label of at least one sample; (D) query is carried out in the re-sequencing data file according to the query condition input by the user, and attribute information meeting the query condition in the genome is obtained; (E) the attribute information meeting the query condition in the genome is displayed. By means of the processing method, query is carried out according to the query condition which the user is interested in and the attribute information meeting the query condition is quickly displayed, operation is easy, clients can inquire by themselves conveniently, and diverse query demands of the clients can be met as well.

Description

technical field [0001] The present invention relates to the field of high-throughput sequencing data processing, in particular, to a processing method and processing device for resequencing data. Background technique [0002] With the development of high-throughput sequencing technology, the cost and efficiency of gene sequencing have been greatly reduced and increased, respectively. More and more scientific research projects have used high-throughput sequencing to study gene-related topics. In the field of gene sequencing, there is no software for personalized query of resequencing results, which is a big gap. [0003] After obtaining a large amount of sequencing data, there are few softwares for effective screening and display, and the functions are not complete and the pertinence is not strong. For example, DNAStar software is composed of seven modules: EditSeq MegAlign, GeneQuest MapDrawPrimerSelect Protean SeqMan II. Its main functions include: sequence format conversi...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): G06F17/30G06F19/22
CPCG06F16/152G16B40/00G16B50/00
Inventor 牛青山曹银川闫军
Owner BEIJING NOVOGENE TECH CO LTD
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