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1 results about "Re sequencing" patented technology

Method and system for correcting hi-c sequence alignment by fusing dna methylation information

PendingCN122266460AProteomicsGenomicsDNA methylationRe sequencing
The application discloses a method and system for correcting Hi-C sequence alignment by fusing DNA methylation information, and the method comprises the following steps: obtaining a preliminary alignment result of Hi-C sequencing of a sample genome relative to a reference genome and a methylation site map; obtaining a corresponding candidate alignment position and an original sequence alignment score of each read pair; positioning an alignment interval on the reference genome at both ends of each candidate alignment position; based on the methylation site map, counting the number of methylation sites covered at both ends of the candidate alignment position to obtain a methylation penalty score representing biological consistency; obtaining a recalibration comprehensive score based on the methylation penalty score, reordering all candidate alignment positions of the read pair, calculating an alignment quality update value of each candidate position, and outputting a corrected alignment result. The application solves the problem that in a polyploid and a highly repetitive genome, multiple alignment of Hi-C reads cannot accurately determine the real source position.
Owner:WUHAN FRASERGEN CO LTD