Primer composition and kit for detecting autophagy key gene expression level in Drosophila melanogaster, and use method of kit

A technology of primer composition and autophagy, applied in biochemical equipment and methods, recombinant DNA technology, microbial measurement/testing, etc., can solve the problems of inaccurate quantification, low sensitivity, high technical cost, etc., and achieve production saving Cost and detection cost, good sensitivity and specificity, avoid the effect of low specificity

Active Publication Date: 2017-04-26
HANGZHOU DIANZI UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

The advantages of fluorescent quantitative PCR technology: high sensitivity and accurate quantification, but there are also the following disadvantages: 1) low throughput: if only one fluorescent marker is used, only one gene can be detected at a time
When a sample needs to detect multiple genes at the same time, it must be tested one by one, the cost is relatively high, the efficiency is low, the cycle is long, and it is impossible to start with a large number of samples
2) The cost is relatively high: if multiple genes need to be detected at the same time, multiple fluorescent markers are required; at present, a maximum of 4 to 5 fluorescent markers are used in common to mark each gene segment to be detected, so multiple fluorescent markers are used relatively high cost
[0006] (2) As a relatively new technology, RNA sequencing has the advantages of high sensitivity and high throughput, but it is expensive
It has the advantages of high throughput, but the technology is expensive and complicated, and the synthesis and fixation of probes are complicated, and it cannot be accurately quantified, with poor repeatability and low sensitivity.
[0008] (4) The fluorescent in situ hybridization method is to hybridize fluorescently labeled gene probes to intracellular nucleic acids in situ, and detect the brightness and quantitative gene expression levels through a fluorescent microscope, which has the disadvantages of low throughput, low sensitivity, and high cost.

Method used

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  • Primer composition and kit for detecting autophagy key gene expression level in Drosophila melanogaster, and use method of kit
  • Primer composition and kit for detecting autophagy key gene expression level in Drosophila melanogaster, and use method of kit
  • Primer composition and kit for detecting autophagy key gene expression level in Drosophila melanogaster, and use method of kit

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0041] The invention is a kit for detecting the expression level of key genes of autophagy in Drosophila melanogaster, and the kit includes the following reagents:

[0042] 1) DEPC water

[0043] 2) 5×RT buffer

[0044] 3) RT primer mix

[0045] 4) RT enzyme (full name reverse transcriptase)

[0046] 5) Solution Z

[0047] 6) 10×PCR buffer

[0048] 7) PCR primers

[0049] 8) 25mM magnesium chloride solution

[0050] 9) DNA polymerase

[0051] 10) Positive control

[0052] The above reverse transcription primers include RT amplification primers of 10 key genes of autophagy and RNA internal reference in Table 1 and Table 2, and the PCR primers include 10 key genes of autophagy and RNA in Table 1 and Table 2. The PCR amplification primers and gene sequences of the internal reference are shown in Table 2 below.

[0053] The above Z solution includes deoxynucleotide triphosphates (dNTPs) and universal primers. The sequence of the forward amplification primer of the univers...

Embodiment 2

[0068] The present invention is a kit for detecting the expression level of autophagy key genes in Drosophila melanogaster, the detected genes include Drosophila melanogaster genes Atg3, Atg4a, Atg4b, Atg5, Atg7, Atg8a, Atg8b, Atg10, Atg12, Atg16 ( See Table 1). Drosophila melanogaster samples were collected, nucleic acid was extracted, reverse transcription and PCR reactions were performed using the sample nucleic acid as a template, and finally the sample was separated by capillary electrophoresis. The specific steps were as follows:

[0069] 1. Production of a kit for detecting the expression level of key genes of autophagy in Drosophila melanogaster based on the GeXP multiple gene expression genetic analysis system. The components included in the kit are the same as those in Example 1 above;

[0070] 2. Collect samples and extract nucleic acids

[0071] Collect samples from the experimental group and control group of Drosophila melanogaster, isolate and extract nucleic ac...

Embodiment 3

[0098] Embodiment 3: detection kit sensitivity, specificity analysis

[0099] Sensitivity analysis: After diluting the positive control according to a certain copy number ratio, PCR amplification and capillary electrophoresis detection until no signal is detected, the copy number is the lowest detection line, which is the sensitivity of the kit. Sensitivity up to 45 copies.

[0100] Specificity analysis: Single-plex PCR amplification is detected as a single peak of the target fragment size by capillary electrophoresis.

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Abstract

The present invention discloses a primer composition and a kit for detecting the autophagy key gene expression level in Drosophila melanogaster, and a use method of the kit. The primer composition comprises RT amplification primers and PCR amplification primers of 10 autophagy key genes and a RNA internal reference. The kit comprises DEPC water, a 5* RT buffer liquid, reverse transcription primers, reverse transcriptase, a Z solution, a 10* PCR buffer liquid, PCR primers, a 25 mM magnesium chloride solution, DNA polymerase, and a positive reference substance. According to the present invention, with the primer composition and the kit, the 10 autophagy key genes of Drosophila melanogaster can be simultaneously detected, and the detection of 192 samples can be completed in one day, such that the production cost and the detection cost can be saved, and the detection efficiency can be increased; and the RNA internal reference provides the control internal reference of the RNA integrity of the sample, such that the determination on the sample quality during the test process can be ensured, the false negative can be avoided, and the detection has the good sensitivity and the good specificity so as to avoid the problem of not high specificity of other detection methods.

Description

technical field [0001] The invention relates to a multiple gene detection kit and its application, in particular to a primer composition, a kit and its application for detecting the expression level of key autophagy genes in Drosophila melanogaster. Background technique [0002] Autophagy is an important process for the turnover of intracellular substances that is evolutionarily conserved in eukaryotes. In this process, some damaged proteins or organelles are wrapped by autophagic vesicles with a double-membrane structure, and sent to lysosomes (animals) or vacuoles (yeast and plants) for degradation and recycling, thereby realizing the cell itself. metabolic needs and the renewal of certain organelles. People have known the existence of autophagy for a long time, but only after the pioneering research of Japanese scientist Yoshinori Ohsumi, the winner of the 2016 Nobel Prize in Physiology and Medicine, did people realize its mechanism and understand its importance. At pre...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68C12N15/11
CPCC12Q1/6851C12Q1/6888C12Q2600/158C12Q2600/16C12Q2521/107C12Q2531/113C12Q2537/143C12Q2545/101C12Q2565/125
Inventor 沈洁
Owner HANGZHOU DIANZI UNIV
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