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Target gene, primer and probes for detecting and identifying cryptococcus and kit

A cryptococcus and target gene technology, applied in the field of medical mycology, can solve problems such as the difficulty in identifying Cryptococcus neoformans and Cryptococcus gattii, the inability to distinguish between two pathogenic cryptococci, and the laboratory can only report cryptococci, etc.

Inactive Publication Date: 2017-06-27
GENERAL HOSPITAL OF PLA
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Although ink staining of cerebrospinal fluid can preliminarily observe the morphology of cryptococci, the sensitivity is low; cryptococcus antigen reagents can quickly detect cryptococcus antigens, but cannot distinguish between two main pathogenic cryptococci; cryptococcus culture identification not only takes a long time , and it is difficult for most automated identification instruments to identify Cryptococcus neoformans and Cryptococcus gattii, so that the laboratory can only report Cryptococcus, or may mistakenly report Cryptococcus gattii as Cryptococcus neoformans

Method used

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  • Target gene, primer and probes for detecting and identifying cryptococcus and kit
  • Target gene, primer and probes for detecting and identifying cryptococcus and kit
  • Target gene, primer and probes for detecting and identifying cryptococcus and kit

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0037] Example 1: Target genes, primers, probes and kits for the detection and identification of Cryptococcus neoformans and Cryptococcus gattii

[0038] Step 1: Selection of target gene location

[0039] The inventors of the present invention selected the sequence fragment of the copper-zinc superoxide dismutase site as the target gene position by comparing the sequence differences between different genotypes of Cryptococcus neoformans and Cryptococcus gattii and with other fungal genes. Fragments are unique to Cryptococcus and differ between C. neoformans and C. gattii. The obtained nucleotide sequence for detecting the target gene of Cryptococcus neoformans and Cryptococcus gattii is shown in SEQ ID No.1 and / or SEQ ID No.2, wherein SEQ ID No.1 corresponds to Cryptococcus neoformans, and SEQ ID No.2 corresponds to Cryptococcus gattii.

[0040] Step 2: Design of Primers and Probes

[0041] Primer design software was used to design primers for the selected target gene posit...

Embodiment 2

[0071] Example 2: Primers, probes and kits for the detection and identification of Cryptococcus neoformans genes

[0072] Change the primers (CN2F, CN2R, CG3F, CG3R) of detecting Cryptococcus neoformans and Cryptococcus gattii to the primers CN2F and CN2R for detecting Cryptococcus neoformans in step 3 in Example 1, and detect the primers of Cryptococcus neoformans and Cryptococcus gattii The probes (CN2P, CG2P) were changed to the probe CN2P for detecting Cryptococcus neoformans, and the remaining steps of the experiment were completed. The designed primers specifically amplified Cryptococcus neoformans, and the designed probes could further identify Cryptococcus neoformans.

Embodiment 3

[0073] Example 3: Primers, probes and kits for the detection and identification of Cryptococcus gattii genes

[0074] Change the primers (CN2F, CN2R, CG3F, CG3R) of detecting Cryptococcus neoformans and Cryptococcus gattii in step 3 in Example 1 to the primers CG3F and CG3R for detecting Cryptococcus gattii, and detect Cryptococcus neoformans and Cryptococcus gattii The probes (CN2P, CG2P) of Cryptococcus gattii were changed to the probe CG2P for detecting Cryptococcus gattii, and the remaining steps of the experiment were completed. The designed primers specifically amplified Cryptococcus gattii, and the designed probes could further identify the Teptococcus.

[0075] Use primer and probe of the present invention to carry out pathogenic bacteria detection to clinical infection patient, clinical case verification is the following table:

[0076] Clinical data and strain identification results of patients infected with Cryptococcus neoformans and Cryptococcus gattii

[0077] ...

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Abstract

The invention discloses a target gene, a primer and probes for detecting and identifying cryptococcus and a kit, which belong to the field of medical mycology. According to the target gene of the cryptococcus, the sequences of the primer for detecting a gene of the cryptococcus is designed, which are shown as SEQ ID No.3 and SEQ ID No. 4 and / or SEQ ID No. 6 and SEQ ID No. 7, wherein the SEQ ID No.3 and the SEQ ID No. 4 correspond to cryptococcus neoformans, the SEQ ID No. 6 and the SEQ ID No. 7 correspond to cryptococcus gattii; and the primer can be used for specific detection of the cryptococcus neoformans and the cryptococcus gattii. Based on the fluorogenic quantitative PCR (polymerase chain reaction) principle, the invention also provides a group of probes for detecting the cryptococcus neoformans and / or the cryptococcus gattii and the detection kit based on the primer and the probes, and the probes and the kit can be used for detecting the cryptococcus neoformans and the cryptococcus gattii that are pathogenic in a same system simultaneously or respectively. The target gene, the primer, the probes and the kit have the advantages of high sensibility, strong specificity, good repeatability and short detection time.

Description

technical field [0001] The invention belongs to the field of medical mycology, and in particular relates to primers, probes and kits for detecting specific target genes of cryptococcus. Background technique [0002] At present, there are many types of Cryptococcus, which are widely distributed in nature. The most closely related to human infection are Cryptococcus neoformans and Cryptococcus gattii. They can cause cryptococcosis in the human lung or central nervous system, and can also cause systemic Disseminated infection. Cryptococcus gattii once caused outbreaks in Vancouver, Canada and the Northwest of the United States. In recent years, infection cases have also been reported in Europe and my country. In my country, Cryptococcus gattii is mainly distributed in Shanghai, Jiangsu, Fujian, Zhejiang, Guangdong, Hainan, and Hebei In other provinces, there are sporadic cases of Cryptococcus neoformans. Cryptococcus neoformans mainly infects immunocompromised patients, while ...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68C12N1/04C12N15/53C12N15/11C12R1/645
Inventor 沈定霞郭玲宋阳
Owner GENERAL HOSPITAL OF PLA
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