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Method for preparing protein deacetylase inhibitors

A compound and reaction technology, applied in the field of compound preparation, can solve the problems of loss of intermediates, impractical industrial expansion of synthetic routes, and unscalable problems

Active Publication Date: 2021-08-06
ACETYLON PHARMA
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

In particular milling is known to be an inefficient and non-scalable process
When compound (I) was prepared according to Example 2, the necessary purification steps resulted in significant loss of the desired intermediate, resulting in mediocre overall yields and making further industrial expansion of the synthetic route impractical

Method used

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  • Method for preparing protein deacetylase inhibitors
  • Method for preparing protein deacetylase inhibitors
  • Method for preparing protein deacetylase inhibitors

Examples

Experimental program
Comparison scheme
Effect test

example

[0168] Instruments and methods

[0169] Differential scanning calorimetry (DSC) data was collected using a TA Instruments Q10DSC. Roughly, samples (2-8 mg) were placed in unsealed, but covered, airtight chromate anodized (alodined) aluminum sample pans and heated at 10 °C / min under a nitrogen purge of 50 mL / min. The scan was performed from 30°C to 300°C at a rate of (minutes).

[0170] Thermogravimetric analysis (TGA) data was collected using a TA Instruments TGA Q500. Roughly, 5-10 mg of sample was placed in an open pre-tared aluminum sample pan and scanned from 25°C to 300°C at a rate of 10°C / min using a nitrogen purge of 60 mL / min.

[0171] X-ray powder diffractometer (XRPD) patterns were obtained using a Bruker D8 Advance equipped with a Cu Kα radiation source (λ = 1.54°A), a 9-position sample holder and a LYNXEYE ultrafast detector. Samples were analyzed on a background-free silicon wafer holder.

[0172] Dynamic vapor sorption (DVS) analysis was performed using an ...

example 1

[0177] Example 1: Comparison of 2-(diphenylamino)-N-(7-(hydroxylamino)-7-oxoheptyl)pyrimidine-5-formamide become

[0178] Reaction scheme

[0179]

[0180] Synthesis of intermediate 2: aniline (3.7g, 40mmol), compound 1 (7.5g, 40mmol) and K 2 CO 3 (11g, 80mmol) in DMF (100ml) was degassed and heated at 120°C under N 2 Stir overnight. The reaction mixture was cooled to room temperature and diluted with EtOAc (200ml), then washed with saturated brine (200ml x 3). The organic layer was separated and washed with Na 2 SO 4 Drying, evaporation to dryness and purification by silica gel chromatography (petroleum ether / EtOAc=10 / 1) gave the desired product (6.2 g, 64%) as a white solid.

[0181] Synthesis of Intermediate 3: Compound 2 (6.2g, 25mmol), iodobenzene (6.12g, 30mmol), CuI (955mg, 5.0mmol), Cs 2 CO 3 (16.3g, 50mmol) in TEOS (200ml) was degassed and purged with nitrogen. The resulting mixture was stirred at 140°C for 14 hours. After cooling to room temperatur...

example 2

[0185] Example 2: 2-((2-Chlorophenyl)(phenyl)amino)-N-(7-(hydroxyamino)-7-oxoheptyl)pyrimidine-5-formyl Comparative synthesis of amine-compound (I)

[0186] Reaction scheme

[0187]

[0188] step 1)

[0189] Synthesis of Intermediate 2: Aniline (3.7g, 40mmol), ethyl 2-chloropyrimidine-5-carboxylate 1 (7.5g, 40mmol), K 2 CO 3 (11g, 80mmol) in DMF (100ml) was degassed and heated at 120°C under N 2 Stir overnight. The reaction mixture was cooled to room temperature and diluted with EtOAc (200ml), then washed with saturated brine (200ml x 3). The organic layer was separated and washed with Na 2 SO 4 Drying, evaporation to dryness and purification by silica gel chromatography (petroleum ether / EtOAc=10 / 1) gave the desired product (6.2 g, 64%) as a white solid.

[0190] step (2)

[0191] Synthesis of Intermediate 3: Compound 2 (69.2g, 1 equivalent), 1-chloro-2-iodobenzene (135.7g, 2 equivalents), Li 2 CO 3 (42.04g, 2 equivalents), K 2 CO 3 (39.32 g, 1 equiv),...

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Abstract

The present invention relates to methods and intermediates useful for the synthesis of protein deacetylase inhibitors of formula (Ia), said method comprising the following steps (11a)(3a).

Description

[0001] related application [0002] This application claims priority to US Provisional Application No. 62 / 172,624, filed June 8, 2015, the contents of which are hereby incorporated by reference in their entirety. Background technique [0003] [0004] Compound (I) is disclosed in US Patent No. 8,148,526 as an HDAC inhibitor. Example 2 of US Patent Application Publication No. 2015 / 0099744 discloses the synthesis of compound (I). As detailed herein in Example 3, this synthetic procedure resulted in the formation of substantial dechlorination and chlorine migration by-products. These impurities have a solubility similar to that of the desired intermediate. Removing impurities is very challenging and requires long processing times involving extensive washing, grinding and crystallization. Grinding in particular is known to be an inefficient and non-scalable process. When compound (I) was prepared according to Example 2, the necessary purification steps resulted in signific...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C07D239/30C07D239/42
CPCC07D239/30C07D239/42
Inventor F·塞伊迪J·H·范杜泽尔
Owner ACETYLON PHARMA