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Scalable large-scale biomedical sample management and visualization platform

A biomedical, large-scale technology, applied in the field of biology or medicine, can solve the problems of not being able to freely select search items and search forms, providing search sample results for those who cannot, and being difficult to meet the various needs of users, achieving convenient distributed The expansion of deployment and storage, the realization of statistics and visualization, the effect of fast operation

Active Publication Date: 2021-04-13
HARBIN INST OF TECH
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0006] In most sample databases, the search form is relatively simple, and only certain items or certain conditions can be used to search, and the search items and search forms cannot be freely selected, and sometimes it is difficult to meet the various needs of users
In terms of search results, there is also a lack of corresponding statistics and visualization, which cannot provide system users with a more vivid and overall grasp of search sample results

Method used

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  • Scalable large-scale biomedical sample management and visualization platform

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specific Embodiment 1

[0027] An expandable large-scale biomedical sample management and visualization platform is characterized in that: the platform includes a sample statistics module, a visualization module, a retrieval module and a mongodb database, and the platform is connected to the mongodb database.

[0028] The platform uses a non-relational database mongodb to be responsible for data storage and management, and mongodb is responsible for adding new sample data and other operations. According to the current demand, there is only one database server in the cluster. In the future, the number of database servers in the cluster can be further increased to expand data storage according to the increase in data volume and the improvement of operating efficiency requirements. At the same time, further data backup and load balancing can be performed. Further improve system reliability and availability.

[0029] The platform enables quality control of samples. In the process of sample storage, the ...

specific Embodiment 2

[0033] A scalable large-scale biomedical sample management and visualization platform operation method, comprising the following steps:

[0034] Step 1: The user logs in to the scalable large-scale biomedical sample management and visualization platform for identity and authority verification;

[0035] Step 2: After the user completes the authority verification, the user adds data information to the platform and uploads it;

[0036] Step 3: Perform quality inspection on the added data information, the data information that fails the quality inspection is not stored in the mongodb database and returned to the customer to correct the error, and the data information that passes the quality inspection is stored in the mongodb database;

[0037] Step 4: The user comprehensively searches the sample information in the mongodb database through multiple conditions, and checks the statistics of the search results.

[0038] Step 5: After the retrieval is completed, the scalable large-sc...

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Abstract

The invention is an expandable large-scale biomedical sample visualization platform. The platform includes a sample statistics module, a visualization module, a retrieval module and a mongodb database system. The user logs in to the platform for identity and authority verification, and after the user completes the authority verification, the user adds data information to the platform and uploads it. Perform quality inspection on the added data information, and store the data information that passes the quality inspection into the mongodb database system. Users comprehensively search the sample information in the mongodb database through multiple conditions, and view the statistics of the search results. After the retrieval is completed, the platform counts the sample search results and presents them to users in the form of visual charts and the like. The present invention realizes more convenient distributed deployment and expandable storage for massive biomedical samples, and can provide more convenient operation at the same time, greatly improving the management and use efficiency of biomedical samples.

Description

technical field [0001] The invention relates to the field of biology or medicine, and is an expandable large-scale biomedical sample management and visualization platform. Background technique [0002] With the rapid development of modern biomedicine, there are more and more biomedical data, and a key part of the data is the data about biomedical samples. These data are all derived from real organisms, and will be of great significance for research in the fields of medicine and biology. Therefore, the management of biomedical samples is an issue worthy of attention. [0003] At present, most of the management or retrieval platforms for biological and medical related information in China are based on literature management, and there is a lack of management platforms specifically for biomedical samples. Therefore, the biomedical sample management platform established in this patent can better manage sample information. management and help researchers make better use of relev...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): G06F16/21G06F16/28G06F16/215G06F16/248G06F16/242
Inventor 臧天仪刘春圃
Owner HARBIN INST OF TECH
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