Brain function network classification method based on variational auto-encoder

A brain function network and autoencoder technology, applied in the field of medical image analysis, can solve the problems of ignoring topological structure relationships, limited data modeling capabilities, and insufficient information in input feature vectors, achieving good distribution characteristics and improving generalization. Ability to achieve the effect of dimensionality reduction

Active Publication Date: 2019-08-30
XI AN JIAOTONG UNIV
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Problems solved by technology

[0006] In order to overcome the problem that the input feature vector contains insufficient information in the traditional brain function network classification method, ignores the topological structure relationship between different brain regions in the brain function network, and the traditional machine learning algorithm has limited data modeling capabilities, the present invention The purpose is to propose a brain function network classification method based on variational autoencoders. Group independent component analysis (Group ICA) can effectively distinguish signals with physiological significance from noise signals, and can separate brain networks with co-a

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[0047] A brain function network classification method based on a variational autoencoder of the present invention will be described in detail below in conjunction with the accompanying drawings. Classification of functional brain networks in autistic and normal individuals.

[0048] Such as figure 1 Shown, the present invention comprises the following steps:

[0049] Step 1. Collect enough brain T1-weighted structural images (T1WeightedMRI) and rest state functional MRI (rs-fMRI) images of normal people and autistic patients. In this example, a total of 316 cases were collected. According to the MRI data of the test subjects, 143 of them were diagnosed as autistic, and the remaining 175 were normal.

[0050] Step 2: Preprocessing the collected structural MRI images and functional MRI images, extracting the brain from T1-weighted structural images, cortical reconstruction, head motion estimation and correction, slice time correction, intra-individual registration, global norm...

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Abstract

The invention discloses a brain function network classification method based on a variational autoencoder. The method comprises the following steps: The method comprises the following steps of: acquiring T1 weighted MRI and rs-fMRI of a plurality of normal people and patients with brain cognitive impairment; carrying out pretreatment; carrying out double regression analysis by taking the preprocessed rs-fMRI as a regression dependent variable and the brain function network as a regression independent variable to obtain an individual level brain function network; constructing a deep variationalautoencoder (VAE) model, taking the obtained individual level brain function network diagram as the input and output of the VAE, and taking the encoder part as a feature extraction module for obtaining the implicit code of the individual function network; constructing a multi-layer sensor network to classify the codes obtained by the VAE in the step 4; and deducing samples in the test set by using the trained classifiers for different brain function networks, and fusing deduction results of the classifiers to obtain a final classification result.acquiring T1 weighted magnetic resonance imagesT1 Weighted MRI and resting state functional magnetic resonance images rs-of a plurality of normal persons and patients with brain cognitive impairment; fMRI; carrying out pretreatment; pretreated rs- Performing double regression analysis by taking fMRI as a regression dependent variable and taking the brain function network as a regression independent variable to obtain an individual level brainfunction network; constructing a depth variation auto-encoder (VAE) model, taking the obtained individual level brain function network diagram as input and output of the VAE, and taking the encoder part as a feature extraction module for obtaining hidden codes of the individual function network; constructing a multi-layer perceptron network to classify the codes obtained by the VAE in the step 4;inferring samples in the test set by utilizing a plurality of trained classifiers for different brain function networks, and fusing inference results of the plurality of classifiers to obtain a finalclassification result; according According to the invention, the classification accuracy is improved.

Description

technical field [0001] The invention relates to the technical field of medical image analysis, in particular to a method for processing and classifying functional magnetic resonance images in the field of brain science, in particular to a brain function network classification method based on a variational autoencoder. Background technique [0002] The human brain is one of the most complex systems in nature, and various neurophysiological activities of the brain are the result of interactions between different brain regions. The realization of a complex cognitive task often requires the cooperation of multiple brain regions. The study of the interdependence between different brain regions will help to deepen human understanding of the way the brain works. Modeling brain function from the perspective of network has been proved to be an effective research method, and the analysis of brain function network has become one of the important research directions in the field of brai...

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Application Information

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IPC IPC(8): G06K9/62G06N3/04
CPCG06N3/045G06F18/2134G06F18/24
Inventor 刘天杨明范庚陈宇豪
Owner XI AN JIAOTONG UNIV
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