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Reagent kit for detecting streptococcus pyogenes

A technology of Streptococcus pyogenes and kits, which is applied in the determination/testing of microorganisms, biochemical equipment and methods, etc., can solve the problems of high cost, delay in disease treatment, lack of specific primers, etc., and achieve high specificity and equipment requirements low effect

Inactive Publication Date: 2019-09-17
ZHEJIANG UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

The traditional detection method is bacterial culture or combined PCR sequencing, but bacterial culture takes 5-7 days, and PCR often cannot distinguish Streptococcus pyogenes from other Streptococci due to the lack of specific primers, so joint generation sequencing is required to Identification, high cost, takes several days to get results
During this period, clinicians can only use medicines based on experience because they have not obtained test results, which often leads to delays in disease treatment

Method used

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  • Reagent kit for detecting streptococcus pyogenes
  • Reagent kit for detecting streptococcus pyogenes
  • Reagent kit for detecting streptococcus pyogenes

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0014] Embodiment 1: Streptococcus rpoB gene sequence alignment

[0015] Such as figure 1 As shown, in the rpoB gene sequence of Streptococcus pyogenes, the 5' end of the guide RNA sequence (selected part) of the present invention is the PAM structure of TTTN. The guide RNA sequence does not have a completely consistent sequence in Streptococcus dysgalactiae and Streptococcus agalactiae, and there are several base differences. Moreover, there is no PAM structure of TTTN at the 5' end of the homologous sequence in Streptococcus dysgalactiae and Streptococcus agalactiae, so using this guide RNA, the Cas12a protein cannot be targeted to Streptococcus dysgalactiae and Streptococcus agalactiae, so , when testing, only Streptococcus pyogenes can show a positive reaction, and the rest of Streptococcus pyogenes are negative, which can be used for the specific detection of Streptococcus pyogenes.

Embodiment 2

[0016] Embodiment 2: The guide RNA specificity determination of the present invention, the steps are as follows:

[0017] (1) Prepare Streptococcus pyogenes, Streptococcus dysgalactiae, Streptococcus agalactiae standard strains;

[0018] (2) Take 1ml of the sample to be tested, heat it at 98 degrees Celsius for 5min, and draw 1μl as the test sample;

[0019] (3) Prepare the reaction system, the reaction system is 25 μl, including 1 μl detection sample, 14.75 μl hydrated TwistAmp basickit reaction drying ball (TwistDx company), 0.9 μl 10mM RPA-F (sequence is SEQ No.2) and RPA-R ( Sequence is SEQNo.3), 0.375 μl Ribonuclease Inhibitor (Takara company), 3.5 μl buffer2.1 (NEB company), 1000nM guide RNA (sequence is SEQ No.1), 250nM Cas12a (NEB company), 200nM single-stranded DNA probe Needle (Shanghai Sangong), add water to make up to 25μl;

[0020] (4) React at a constant temperature of 37 degrees Celsius for 30 minutes;

[0021] (5) After the reaction, place the PCR tube under...

Embodiment 3

[0023] Embodiment 3: the detection method based on guide RNA described in the present invention and traditional PCR method specificity and experimental time-consuming comparison

[0024] 1. based on the detection method of guide RNA described in the present invention, the steps are as follows:

[0025] (1) Prepare Streptococcus pyogenes, Streptococcus dysgalactiae, Streptococcus agalactiae standard strains;

[0026] (2) Take 1ml of the sample to be tested, heat it at 98 degrees Celsius for 5min, and draw 1μl as the test sample;

[0027] (3) Prepare the reaction system, the reaction system is 25 μl, including 1 μl detection sample, 14.75 μl hydrated TwistAmp basickit reaction drying ball (TwistDx company), 0.9 μl 10mM RPA-F (sequence is SEQ No.2) and RPA-R ( Sequence is SEQNo.3), 0.375 μl Ribonuclease Inhibitor (Takara company), 3.5 μl buffer2.1 (NEB company), 1000nM guide RNA (sequence is SEQ No.1), 250nM Cas12a (NEB company), 200nM single-stranded DNA probe Needle (Shanghai...

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Abstract

The invention provides a reagent kit for detecting streptococcus pyogenes. The reagent kit contains a guide RNA specifically targeted to a streptococcus pyogenes rpoB gene, an amplification primer pair, a hydration TwistAmp basic kit reaction drying ball, LbCas12a protein, a single-stranded DNA probe (ssDNA), a Ribonuclease Inhibitor and a buffer solution. When the reagent kit is used for detecting the streptococcus pyogenes, the detection specificity is high, and the streptococcus pyogenes can be distinguished from other streptococcus including streptococcus dysgalactiae and streptococcus agalactiae. Besides, when the RNA sequence is used for detection, time consumption is about 1 hour, a PCR instrument is not needed, requirements for equipment are low and are notably lower than those by a traditional bacteria culture method or a PCR sequencing method, and the clinical use value is large.

Description

technical field [0001] The invention belongs to the field of detection of pathogenic bacteria, and relates to a kit for detection of Streptococcus pyogenes. This kit can be used for rapid detection of Streptococcus pyogenes. Background technique [0002] Streptococcus pyogenes is a common bacterial group among Gram-positive bacteria that infects human beings, which brings a huge burden to patients and society. The traditional detection method is bacterial culture or combined PCR sequencing, but bacterial culture takes 5-7 days, and PCR is often unable to distinguish Streptococcus pyogenes from other Streptococcus due to the lack of specific primers, so joint generation sequencing is required. Identification is expensive and takes several days to produce results. During this period, clinicians can only use medicines based on experience because they do not obtain test results, which often leads to delays in disease treatment. Therefore, how to quickly detect Streptococcus p...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/689C12Q1/6844C12Q1/14
CPCC12Q1/6844C12Q1/689C12Q2531/119C12Q2563/107
Inventor 孙泽玮陈文静郑良荣
Owner ZHEJIANG UNIV
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