Looking for breakthrough ideas for innovation challenges? Try Patsnap Eureka!

Test kit and detection method for quantitative detection of high-throughput sequencing library

A sequencing library and quantitative detection technology, applied in the field of high-throughput sequencing, can solve problems such as uneven sequencing data quality, and achieve the effect of improving sequencing quality

Pending Publication Date: 2020-05-01
深圳海普洛斯医学检验实验室 +1
View PDF2 Cites 4 Cited by
  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0004] However, in practice, it often happens that after the concentration is determined according to the quantitative detection results of the dye method QPCR, the optimized sequencing concentration is used, but the quality of the final sequencing data is uneven.

Method used

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
View more

Image

Smart Image Click on the blue labels to locate them in the text.
Viewing Examples
Smart Image
  • Test kit and detection method for quantitative detection of high-throughput sequencing library
  • Test kit and detection method for quantitative detection of high-throughput sequencing library
  • Test kit and detection method for quantitative detection of high-throughput sequencing library

Examples

Experimental program
Comparison scheme
Effect test

Embodiment

[0029] In this example, human leukocyte genomic DNA (gDNA) was used to construct a high-throughput sequencing library based on the Illumina sequencing platform. Specifically, KAPAHyper Prep Kit (KK850407962363001) was used to construct a high-throughput sequencing library of three human leukocyte gDNA. The specific steps of high-throughput sequencing library construction refer to the instruction manual of the KAPHyperPrep Kit kit. The three high-throughput sequencing libraries constructed by human leukocyte gDNA are labeled as library 1, library 2, and library 3.

[0030] Among them, the gDNA sample fragmentation was performed using an ultrasonic disintegrator Covaris M220. The specific parameters are: 500μL of gDNA, which is 1000ng, temperature 20°C, Peak Power 50.0, Duty Factor 30.0, Cycle / Burst 200, and time 300sec.

[0031] For the adapter sequence of the Illumina sequencing platform, detection primers and detection probes for the adapter sequence are designed in this example; ...

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

PUM

No PUM Login to View More

Abstract

The invention discloses a test kit and a detection method for quantitative detection of a high-throughput sequencing library. The test kit comprises a detection primer and a detection probe which aredesigned for the joint sequence of a to-be-detected high-throughput sequencing library, wherein upstream and downstream primers of the detection primer have sequences shown as Seq ID No.1 and Seq ID No.2; the detection probe has a sequence shown as Seq ID No.3; the 5'end of the detection probe is modified by a fluorophore; and the 3'end of the detection probe is modified by a fluorescence quenching group. According to the test kit, an NGS library is quantitatively detected through a TaqMan probe method, and absolute quantification of the NGS library can be achieved; and compared with a conventional dye method for QPCR quantitative detection, the test kit can obtain the actual concentration of the NGS library more accurately; the size of a DNA fragment based on the NGS library does not needto be corrected, which is of great significance to high-throughput sequencing; and the sequencing quality can be improved, so an optimal sequencing data result is obtained.

Description

Technical field [0001] This application relates to the field of high-throughput sequencing technology, and in particular to a kit and detection method for quantitative detection of high-throughput sequencing libraries. Background technique [0002] The purpose of preparing a high-throughput sequencing library (NGS library) is to connect specific linker sequences to the fragmented nucleic acid fragments to be tested so that they can be sequenced on a high-throughput sequencing platform. The quality of the NGS library is critical to the quality of data produced by high-throughput sequencing (NGS). Therefore, before the NGS library is sequenced on the computer, its concentration needs to be accurately determined, so that the appropriate on-line sequencing concentration can be adjusted during the on-line sequencing, and finally the optimal sequencing data result can be obtained. [0003] The QPCR method for NGS library quantitative detection uses specific primers to quantify only the ...

Claims

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

Application Information

Patent Timeline
no application Login to View More
Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6851C12N15/11
CPCC12Q1/6851C12Q2561/101C12Q2531/113C12Q2561/113
Inventor 许明炎张晓妮杨庆
Owner 深圳海普洛斯医学检验实验室
Who we serve
  • R&D Engineer
  • R&D Manager
  • IP Professional
Why Patsnap Eureka
  • Industry Leading Data Capabilities
  • Powerful AI technology
  • Patent DNA Extraction
Social media
Patsnap Eureka Blog
Learn More
PatSnap group products