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A method for separating and enriching circulating tumor dna

A technology for separation and enrichment of tumors, applied in the field of separation and enrichment of circulating tumor DNA, which can solve the problems of high fragmentation and low concentration of ctDNA

Active Publication Date: 2021-11-19
南京医科大学附属南京医院
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

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Problems solved by technology

However, the concentration of ctDNA is low, highly fragmented, and the proportion of mutation sites that can be detected is very low, so separation and enrichment are particularly important

Method used

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  • A method for separating and enriching circulating tumor dna
  • A method for separating and enriching circulating tumor dna
  • A method for separating and enriching circulating tumor dna

Examples

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Embodiment 1

[0056] The ctDNA content obtained according to the method of the present invention includes:

[0057] Step 10) Centrifuge the plasma sample at a centrifugal force of 500g for 5 minutes to remove the precipitate and obtain the first supernatant.

[0058] Step 20) Centrifuge the first supernatant with a centrifugal force of 2000 g for 10 minutes, remove the precipitate, and obtain the second supernatant.

[0059] Step 30) Centrifuge the second supernatant at a centrifugal force of 10,000 g for 30 minutes to remove the precipitate to obtain a third supernatant.

[0060] Step 40) Add Thrombin reagent to the third supernatant, the volume ratio of the Thrombin reagent to the third supernatant is 0.01:1, mix and place at 25°C for 5 minutes, then centrifuge at 10000g for 5 minutes , remove the precipitate to obtain the fourth supernatant.

[0061] Step 50) Add Exoquick exosome extraction reagent to the fourth supernatant, the volume ratio of the Exoquick exosome extraction reagent t...

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Abstract

The invention provides a method for separating and enriching circulating tumor DNA, comprising the following steps: step 10) centrifuging the plasma sample to obtain a first supernatant; step 20) centrifuging the first supernatant to obtain a second supernatant supernatant; step 30) centrifuging the second supernatant to obtain a third supernatant; step 40) removing fibrin in the third supernatant to obtain a fourth supernatant; step 50) removing the fourth supernatant exosomes in the supernatant to obtain a fifth supernatant. The separation and enrichment method of circulating tumor DNA provided by the present invention can remove cells and large fragments after the first centrifugation treatment, remove blood platelets after the second centrifugation treatment, and remove large cysts after the third centrifugation treatment The fourth time can remove fibrin, the fifth time can remove exosomes, and the content of circulating tumor DNA in the final fifth supernatant is higher than that obtained by the existing method.

Description

technical field [0001] The invention belongs to the field of biotechnology, and in particular relates to a method for separating and enriching circulating tumor DNA. Background technique [0002] Circulating tumor DNA (corresponding to English: circulating tumor DNA, abbreviated in the text: ctDNA) refers to the continuous flow in the human blood circulation system carrying certain characteristics (including mutations, deletions, insertions, rearrangements, copy number abnormalities, methylation, etc.) from DNA fragments of the tumor genome. As a non-invasive cancer marker, ctDNA has important development prospects in the fields of in vitro diagnosis, medication and prognosis. [0003] ctDNA is derived from tumor cells and widely exists in many tumor types. However, the concentration of ctDNA is low, highly fragmented, and the proportion of mutation sites that can be detected is very low, so separation and enrichment are particularly important. The process of extracting c...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12N15/10
CPCC12N15/1003
Inventor 孙利王书奎徐牧陈晓翔
Owner 南京医科大学附属南京医院
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