Method for detecting DNA intra-molecularly hybridization with known point mutation - polyacrylamide gel electrophoresis
A technology of polyacrylamide gel and DNA molecules, applied in biochemical equipment and methods, analytical materials, measuring devices, etc., can solve the problems of low PCR amplification efficiency, insignificant advantages, and inability to detect unknown mutations
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[0028] (1) Reagents
[0029] The reagents used, whether imported or domestic, must be of analytical purity.
[0030] (2) Method
[0031] 1) Extract DNA using standard phenol / chloroform method.
[0032] 2) PCR: the β-globin gene was amplified by nested PCR (nested PCR). The amplified fragments and primer sequences are listed in Table 1.
[0033]2.1 Primer design: Primers F, D, C, β54, α8 and α9 are external primers. Fragment FD, fragment Cβ54, and fragment 89 were generated, respectively, and used as templates for internal primer PCR. The other primers are internal primers, and the PCR fragments generated by them are used for IMH-PAGE detection.
[0034] 2.2 Outer primer PCR: the volume of the outer primer PCR mixture is 10 μl. Which contains 50mM KCl, 10mM Tris-HCl (pH8.8 at 25 ℃), 0.08% (volume %) Nonidet P40, 1.5mM MgCl 2 , each dNTP 0.125mM, each outer primer 10pmol, 0.4u Taq DNA polymerase (MBI Fermentas, USA) and 0.2μg genomic DNA. The PCR thermocycling conditions...
Embodiment 1
[0043] The patient, Wei, came to see a doctor because of the birth history of a child with severe β-thalassemia. Take 0.5 ml of venous blood, extract the DNA with the standard phenol / chloroform method, and detect it with the IMH-PAGE method, using aggt as primers t When gagtGTGGACAGATCCCCAAAG was confirmed, the patient carried CDs41-42(-TTCT)β-thalassemia gene point mutation, which was consistent with the detection results by traditional PCR-ASO method.
Embodiment 2
[0045] Patient Li, because of the birth history of a child with severe β-thalassemia, went to the doctor. Take 0.5 ml of venous blood, extract the DNA with the standard phenol / chloroform method, and detect it with the IMH-PAGE method, using tcacct as the primer a At gccccCTGCCGTTACTGCCCTG, the patient was diagnosed as carrying a CD17(A-T)β-thalassemia gene point mutation, which was consistent with the results detected by the traditional PCR-ASO method.
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