Novel compounds and methods of treating or ameliorating an il-1r-mediated disease or disorder using same
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[0297]A hybrid structure based screening method was used to design small molecule inhibitors of IL-1R that bind at the antagonist site. Using the 21 amino acid peptide complexed IL-1R crystal structure as a template, a four point hybrid pharmacophore was designed and screened against a library of 3 million small molecules. The resulting 662 hits were filtered for drug-like properties, and 230 hits that cleared the filtering schemes were docked to the well-prepared IL-1R protein antagonist binding site using the molecular docking program—GOLD (version 4.1).
[0298]The docked protein-ligand complexes were ranked using customized scoring schemes and five high ranking compounds (KA199, KA494, KA529, KA680, and KA862) were selected for in vitro validation. Molecular docking studies revealed that the compounds bind to the same site as the antagonist peptide or endogenous protein and hence can block the interaction of IL-1 with the IL-1R (FIG. 1).
example 2
Synthesis
[0299]SSc fibroblasts were cultured with selected molecules of the invention, and total collagen synthesis was assessed with hydroxyproline. Four compounds demonstrated efficacy at 10 mM (FIG. 5). KA862 and KA494 were selected for further in vitro evaluation.
example 3
of IL-1 Signaling
[0300]FIG. 6 illustrates the finding that compounds of the invention directly blocks IL-1 signaling in normal fibroblasts.
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