Vaccines
A technology of nucleotide sequences and fragments, used in vaccine preparations, administering vaccines by particle-mediated release, application of preparations in medicines, and the field of DNA vaccines
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Embodiment 1
[0207] Example 1: Optimization of p55gag (p17, p24, p13) to resemble codon utilization of highly expressed human genes
[0208] gene of interest
[0209] An optimized synthetic gene encoding the p55gag antigen of HIV-1 clade B strain HXB2 for expression in mammalian cells (GenBank Accession No. K03455) was assembled using PCR amplified overlapping oligonucleotides.
[0210] Optimization involves altering the codon usage patterns of viral genes to obtain codon frequencies close to those found in highly expressed human genes. Codons were determined using a statistical Visual Basic program called Syngene (latest version of Calcgene by R.S. Hale and G. Thompson, Protein Expression and Purification, Vol. 12, pp. 185-188, 1998).
[0211] clone:
[0212] The 1528 bp gag PCR product was gel purified, digested with restriction endonucleases Not I and Bam HI, and ligated into NotI / BamHI digested vector WRG7077. That is, the gene was placed between the CMV promoter / intron A and the bo...
Embodiment 2
[0214] Example 2: Preparation of p17 / p24 truncated Nef fusion gene
[0215] gene of interest
[0216] by PCR from plasmid pHXB? Pr (B. Maschera, E Furfine and E.D. Blair 1995 J. Virol 695431-5436) amplifies the p17 and p24 portions of the p55gag gene derived from HIV-1 clade B strain HXB2. pHXB from the 3' end of the HXB2nef gene was amplified from this plasmid? Pr. 426bp. Since the HXB2nef gene contains a premature stop codon, the codon was repaired with two overlapping PCRs (TGA[stop] to TGG[Trp]).
[0217] The PCR products of the p17 / p24 linker and the trNEF linker were joined by one PCR reaction to form the p17p24trNEF fusion gene ( image 3 )(antonym).
[0218] The 1542 bp product was gel purified, digested with restriction endonucleases NotI and BamHI, and cloned into the NotI BamHI site of vector WRG7077. That is, the gene was placed between the CMV promoter / intron A and the bovine auxin polyadenylation signal.
Embodiment 3
[0219] Example 3: Preparation of Gag p17 / 24opt / trNef1 ('Gagopt / Nef') fusion gene
[0220] gene of interest
[0221] The plasmid pGagOPTrpr2 was used as a template for PCR amplification to obtain codon-optimized p55gag gene p17 and p24 parts derived from HIV-1 clade B strain HXB2. A truncated HXB2Nef gene with a repaired premature stop codon (TGA[stop] to TGG[Trp]) was amplified by PCR from plasmid 7077trNef20. The two PCR products were designed to have overlapping ends so that the two genes were joined in the second round of PCR.
[0222] The 1544 bp product was gel purified, digested with restriction endonucleases NotI and BamHI, and cloned (see figure) into the NotI BamHI site of vector WRG7077. That is, the gene was placed between the CMV promoter / intron and the bovine auxin polyadenylation signal.
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