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Intelligent electrophoresis temperature control tank and time temperature-gel gradient electrophoresis system

An intelligent electrophoresis and intelligent technology, applied in the direction of material analysis by electromagnetic means, biochemical equipment and methods, instruments, etc., can solve the problems that the DGGE electrophoresis system cannot perform TTGG electrophoresis, the heating rate is different, and the heating rate cannot be adjusted according to needs.

Inactive Publication Date: 2010-10-20
NANJING INST OF GEOGRAPHY & LIMNOLOGY +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0017] Conventional DGGE electrophoresis systems cannot be used for TTGG electrophoresis
This is because different samples require different heating rates during TTGG electrophoresis. The function of the temperature control tank of the existing DDGE electrophoresis system is to heat the buffer to a preset temperature and maintain a constant temperature. The heating rate cannot be adjusted as needed.

Method used

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  • Intelligent electrophoresis temperature control tank and time temperature-gel gradient electrophoresis system
  • Intelligent electrophoresis temperature control tank and time temperature-gel gradient electrophoresis system
  • Intelligent electrophoresis temperature control tank and time temperature-gel gradient electrophoresis system

Examples

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Effect test

Embodiment 1

[0037] 1.1 Technical route

[0038] Use a 0.22 μm filter membrane to filter lake water samples → extract bacterial DNA from the filter membrane → PCR amplification (forward primer 341F and reverse primer 907R for bacterial 16SrDNA sequence) → analysis of the melting temperature of the amplification product and its TTGG temperature condition setting → TTGG→Gel photography, band analysis.

[0039] The process of "Amplification Product Melting Temperature Analysis→TTGG" will be introduced in detail below.

[0040] 1.2 Fusion chain analysis of amplified products

[0041] Input the PCR primer sequence into the computer of the system, and the software attached to the computer will predict the sequence of the PCR product after analysis and calculate the melting curve to obtain the initial temperature and target temperature of TTGG, and set the heating time and heating speed according to the difference between the two temperatures Usually between 0.5°C / hour and 3°C / hour. Generally, ...

Embodiment 2

[0053] The same 11 samples were equally divided into two parts, one part was subjected to TTGG electrophoresis according to the above steps of the present invention (Table 3), and the other part was subjected to DGGE electrophoresis (Table 4, the system used refers to ZL200820037544.5), and then the two electrophoresis patterns were analyzed Compare.

[0054]

[0055]

[0056] The result is as figure 2 and image 3 Shown, the TTGG electrophoretic pattern of the present invention ( figure 2 ) with clear bands, rich diversity and high resolution; DGGE electrophoresis pattern ( image 3 ) with blurred bands and low resolution.

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Abstract

The invention relates to an intelligent electrophoresis temperature control tank and a time temperature-gel gradient electrophoresis system comprising the same. The intelligent electrophoresis temperature control tank comprises a tank body, a seal cap and an intelligent temperature controller, wherein a heating device, an electrode connector and a buffer solution circuiting pipe are arranged in the tank body; the temperature control tank can control a heater to heat the buffer solution from initial temperature to target temperature at a constant speed in a set temperature rise duration when the buffer solution reaches the initial temperature, and after the buffer solution reaches the target temperature, constant temperature is maintained for the buffer solution. The time temperature-gradient gel electrophoresis system comprises the intelligent electrophoresis temperature control tank, an electrophoresis bracket and a program-controlled electrophoresis device. The intelligent electrophoresis temperature control tank and the electrophoresis system can save electrophoresis time greatly, reduce the uncertainty of denaturant diffusion, and improve the resolution ratio of gel and the repeatability of the result when used for performing time temperature-gradient gel electrophoresis.

Description

technical field [0001] The invention relates to the field of nucleic acid electrophoresis, in particular to a time-temperature-gel gradient electrophoresis (TTGG, Temporal temperature gel gradient electrophoresis) temperature control tank and an electrophoresis system comprising the temperature control tank. Background technique [0002] Based on existing literature, DGGE (Denatured gradient gel electrophoresis, denaturing gradient gel electrophoresis), TGGE (Temperature gradient gel electrophoresis, temperature gradient gel electrophoresis), TTGE (Temporal temperature gradient gel electrophoresis, time temperature gradient gel electrophoresis) and other electrophoresis techniques can be used to detect DNA point mutations and gene diversity. Among them, the DGGE electrophoresis system appeared the earliest and was widely used. Denaturing gradient gel electrophoresis (DGGE) is an electrophoretic technique first proposed by Fischer et al. (1979) and used to detect DNA mutatio...

Claims

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Application Information

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IPC IPC(8): G01N27/453C12Q1/68
Inventor 谭啸
Owner NANJING INST OF GEOGRAPHY & LIMNOLOGY
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