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Combination probe for screening multiple anomalysyndrome

A combined probe and syndrome technology, applied in the direction of recombinant DNA technology, DNA / RNA fragments, etc., can solve the problems of high cost, unsuitable multi-site screening and detection, and the diagnostic rate is less than 5%

Inactive Publication Date: 2013-04-03
FUDAN UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

At present, more than 250 malformation syndromes have been recognized and diagnosed in medicine; however, due to the obvious specificity and imbalance in the phenotypes of multiple malformation syndromes, it is difficult to achieve accurate diagnosis only by clinical
[0003] With the continuous development of molecular genetic detection technology for the genetic etiology of MCA; in the 1970s, chromosome G-banding technology found microscopic chromosomal abnormalities such as deletions, duplications, translocations, and inversions, but traditional optical microscopy was not effective for abnormal chromosome structures. The maximum resolution is 5-10Mb, and the high-resolution banding technology is only 3-5Mb, so the diagnostic rate is still less than 5%
[0004] At present, the above-mentioned syndromes are usually diagnosed by the method of detecting genome copy number variation in medicine; this method has the following defects: karyotype analysis can only detect duplications / deletions larger than 5Mb; quantitative PCR, with low throughput, is not suitable for multiple sites The screening test of the array platform; the chip test of the Array platform, the cost is significantly higher than that of MLPA, and it is not suitable for the screening of large sample size

Method used

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  • Combination probe for screening multiple anomalysyndrome
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  • Combination probe for screening multiple anomalysyndrome

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0059] Example 1. Design of probe sequences

[0060] (1) Selection of multiple malformation syndrome and its key genes

[0061] refer to http: / / www.ncbi.nlm.nih.gov / sites / GeneTests / Review? db=GeneTests In the description of common multiple malformation syndromes, the syndromes with relatively high incidence and the main etiology of partial duplication / deletion of chromosomes were selected. And according to the description and published related literature reports, select key genes or key regions. If the key gene or key region has not been identified, select one at each end of the duplication / deletion fragment and three genes in the middle to represent the segment.

[0062] (2) Design the probe sequence

[0063] The selected target gene sequence is in http: / / genome.ucsc.edu / cgi-bin / hgBlat Obtain and distinguishably mark coding regions, SNPs and repeat sequences.

[0064] For each target gene, the probe consists of a left-half sequence and a right-half sequence. The 3' en...

Embodiment 2

[0069] Example 2 Identification of probes

[0070] (1) Negative case control

[0071] Select the normal population, extract the whole genome DNA, conduct MLPA experiment, and use Genemarker Demo1.97 version software for data analysis. See image 3 .

[0072] (2) As a positive case control, select 1 case of Sotos syndrome, 1 case of trisomy 18, 1 case of 22q11 deletion / duplication syndrome, 1 case of trisomy 21, 1 case of trisomy 13, and 1 case of Cri du Chat syndrome and 1 case of Prader Willi were tested and verified by Affymetrix 2.7M chip, and patients with corresponding syndromes were clearly diagnosed as positive controls. After the whole genome DNA was extracted, MLPA experiments were performed, and Genemarker Demo version 1.97 software was used for data analysis. See Figure 4 .

Embodiment 3

[0073] Example 3 Detection of Multiple Malformation Cases

[0074] A total of 59 children with multiple malformations hospitalized in the neonatal ward of the Children's Hospital Affiliated to Fudan University were selected. After the whole genome DNA was extracted, the MLPA experiment was performed, and Genemarker Demo version 1.97 software was used for data analysis. A total of 13 positive cases were found, with a discovery rate of 22.03%. There were 7 cases of trisomy 21, 2 cases of 5p15 deletion, 1 case of 22q11 duplication, 1 case of deletion, 1 case of 5q35 deletion, and 1 case of 15q11-q13 deletion.

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Abstract

The invention belongs to the technical field of biology, and relates to a combination probe for screening multiple anomalysyndrome, and in particular relates to combination probe for screening the multiple continuous probe amplification of the multiple anomalysyndrome. The combination probe is used for selecting the key gene of the 1p36 microdeletion syndrome, the Sotos syndrome, the 18 down syndrome, the CHARGE syndrome, the Williams Beuren syndrome, the 22q11 microdeletion / duplication syndrome, the 21 down syndrome, the Smith Magenis syndrome, the 13 down syndrome, the Cri du Chat syndrome, the Prader Willi syndrome, the WolfHirschhorn syndrome and the 17q21.31 microdeletion syndrome, or the gene within a critical area, or the gens arranged at two ends within a duplication / deletion fragment, selecting the sequence which meets a corresponding condition as a probe sequence according to the sequence of the gene; and adding a general primer sequence and adding a phosphorylation mark to the 5'end of a probe left-half sequence and the 3'end of a right-half probe to synthesize the combination probe for the multiple continuous probe amplification. The probe can be used for preliminarily screening the multiple anomalysyndrome.

Description

technical field [0001] The invention belongs to the field of biological technology, and relates to a probe for screening multiple malformation syndromes, in particular to a combined probe for multiple continuous probe amplification for screening multiple malformation syndromes. The probe can be used for preliminary screening of multiple malformation syndrome. Background technique [0002] Congenital malformation (CA) refers to morphological or structural abnormalities that exist at birth; including single malformations (such as cleft lip, polydactyly, etc.) and multiple congenital malformations (MCA). Studies have found that there are a variety of multiple deformities that are specifically combined under the action of a certain cause and become a deformity syndrome. At present, more than 250 malformation syndromes have been identified and diagnosed in medicine; however, due to the obvious specificity and imbalance in the phenotypes of multiple malformation syndromes, it is ...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68C12N15/11
Inventor 周文浩杨琳马端王慧君
Owner FUDAN UNIV
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