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Multiple PCR primers and method for constructing leukemia minimal residual disease BCR library based on high-flux sequencing

A minimal residue and leukemia technology, applied in the field of molecular biology, can solve the problems of labor-intensive, unfavorable clinical standardized detection, interference of mpFC detection, etc., and achieve the effect of improving the detection rate

Inactive Publication Date: 2015-11-18
GENEMIND BIOSCIENCES CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Although the detection sensitivity of mpFC for recurrent disease is 10 -4 , but the complex multi-dimensional data depends on the analysis of the experimenter, and the influence of human factors is large, which is not conducive to clinical standardized detection
In addition, the expression levels of leukemia antigens interfered with the detection of mpFC in MRD after chemotherapy
Relying on molecular means can improve the sensitivity of detecting MRD, which can reach 10 -5 However, real-time quantitative PCR needs to design special primers according to patients to amplify the diverse rearranged sequences, which is expensive, labor-intensive, and difficult to form a standardized experimental process

Method used

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  • Multiple PCR primers and method for constructing leukemia minimal residual disease BCR library based on high-flux sequencing
  • Multiple PCR primers and method for constructing leukemia minimal residual disease BCR library based on high-flux sequencing
  • Multiple PCR primers and method for constructing leukemia minimal residual disease BCR library based on high-flux sequencing

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Embodiment 1

[0054] Embodiment 1 of the present invention provides a method for preparing a B lymphocyte receptor (BCR) DNA sample, comprising the following steps:

[0055] (1) Collect 10 milliliters (ml) of fresh peripheral blood samples each, and operate according to the instructions of the LymphoPrep kit (Axis-shield, Cat. No. AS1114544UK) to obtain relatively pure PBMCs;

[0056] (2) Use the PureLink GenomicDNA MiniKit (LifeTechnology, Cat. No: K1820-00) kit to extract the genomic DNA of the cells obtained in step (1), measure the concentration and purity of the DNA with Nanodrop2000 (Thermo), and then save the genomic DNA.

[0057] DNA extraction electrophoresis results such as figure 1 -a (see lanes 1-2 for genomic DNA fragments; M is DNAMarker).

Embodiment 2

[0059] Embodiment 2 of the present invention provides a method for constructing a high-throughput sequencing library of leukemia minimal residual lesion BCR using multiple PCR primers of the leukemia minimal residual lesion BCR library, comprising the following steps:

[0060] Using the genomic DNA obtained in Example 1 as the amplification template, take the BCR primers, and then use the MultiplexPCR kit from QIAGEN Company (article number: 206143), and configure a multiplex PCR system according to the kit instructions, wherein the BCR primers include upstream primers and downstream primers. The upstream primers are an upstream primer set composed of the nucleotide sequences shown in SEQIDNO:1-SEQIDNO:13, and the downstream primers are a downstream primer set composed of the nucleotide sequences shown in SEQIDNO:14-SEQIDNO:17.

[0061] Each upstream primer is mixed equimolarly, the total primer concentration is 10 micromolar, and each downstream primer is equimolarly mixed, th...

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Abstract

The invention provides multiple PCR primers for constructing a leukemia minimal residual disease BCR library based on high-flux sequencing. The multiple PCR primers comprise upstream primers and downstream primers, wherein the upstream primers are an upstream primer group composed of nucleotide sequences which are 0-3 basic groups more or less than the nucleotide sequences shown in the SEQ ID NO: 1-SEQ ID NO: 13, and the downstream primers are composed of nucleotide sequences which are 0-3 basic groups more or less than the nucleotide sequences shown in the SEQ ID NO: 14-SEQ ID NO: 17. The provided multiple PCR primer group can efficiently construct the B lymphocyte receptor high-flux sequencing library of a leukemia patient, so that rich leukemia minimal residual disease BCR rearrangement information can be obtained.

Description

technical field [0001] The invention belongs to the field of molecular biology, and in particular relates to a multiple PCR primer and a method for constructing a BCR library of leukemia minimal residual lesions based on high-throughput sequencing. Background technique [0002] Leukemia is a malignant clonal disease of the blood system characterized by an increase in immature cells in the bone marrow and / or peripheral blood. At the time of first diagnosis, the total number of leukemia cells in the patient's body was about 10 12 , after chemotherapy to achieve morphological complete remission (Complete Remission, CR), the total number of residual leukemia cells is less than 10 9 , this morphological method is difficult to detect, and a small amount of leukemia cells still remain in the body is called minimal residual disease (minimal residual disease, MRD). Residual MRD in the body causes >50% relapse rate in patients with acute T-lymphoblastic leukemia. Therefore, regu...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12N15/11C12N15/10C12Q1/68C40B50/06
CPCC12N15/10C12N15/11C12Q1/68C40B50/06
Inventor 葛良进刘松林群婷刘丽春曾立董黄莎莎黄亮李改玲
Owner GENEMIND BIOSCIENCES CO LTD
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