LAMP kit for VanB gene detection and primer special for same
A kit and gene technology, applied in the application of VanB gene detection, LAMP kit, the field of molecular biology detection of genes, can solve problems such as unseen, and achieve simple operation, short detection time and high amplification efficiency. Effect
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Embodiment 1
[0043] Example 1. Design of primers for LAMP detection of VanB gene
[0044] The VanB gene sequence (GenBank number: KC489784.1) was retrieved from NCBI's nucleic acid database GenBank (http: / / www.ncbi.nlm.nih.gov), and the homology analysis was performed by BLAST software to obtain the specificity of VanB gene Conserved target sequence (SEQIDNO: 1 in the sequence list), and then according to the conservative target DNA sequence, use the software PrimerdesignV4 to design primers for LAMP detection of VanB gene, and design four sets of primers (codenamed VanB-1, VanB- 6. VanB-9, VanB-12). After experimental comparison, the primer combination VanB12 was finally selected. The primer sequence is as follows.
[0045] Table 1 Primer combination VanB-12 used for LAMP detection of VanB
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Embodiment 2
[0048] Example 2. LAMP detection of VanB gene
[0049] 1. Determine the best primer combination for VanB gene LAMP detection
[0050] The four sets of primer combinations (codenamed VanB-1, VanB-6, VanB-9, VanB-12) designed in Example 1 were used for LAMP detection of VanB gene to obtain the best primer combination. The specific method is as follows:
[0051] 1) Extract the genomic DNA of Enterococcus V583
[0052] With Promega GenomicDNAPurificationKitA1125 extracts the genomic DNA of Enterococcus faecalis V583. The specific extraction method includes the following steps:
[0053] 1. Pipet 560μL of prepared bufferAVL (containing carrierRNA) into a 1.5mL centrifuge tube. (Adjust bufferAVL-carrierRNA proportionally to the actual amount of the sample)
[0054] 2. Add 140μL of plasma, serum, urine, cultured cell supernatant or cell-free body fluid to the centrifuge tube containing bufferAVL-carrierRNA. Mediate for 15 seconds and mix well.
[0055] 3. Leave at room temperature for 10 minut...
Embodiment 3
[0074] Example 3. Detection of specificity and sensitivity of the LAMP detection method of VanB gene of the present invention
[0075] 1. Specific detection of the LAMP detection method of VanB gene of the present invention
[0076] Acinetobacter baumannii, methicillin-resistant Staphylococcus aureus, Mycobacterium tuberculosis, Vibrio cholerae O139 group, Bacillus anthracis, Escherichia coli, Enterohemorrhagic Escherichia coli, Yersinia enterocolitica , Salmonella typhimurium, Salmonella aberdeen, Listeria monocytogenes, Vibrio parahaemolyticus, Acinetobacter rouxii, Enteropathogenic Escherichia coli, Klebsiella pneumoniae, Chronicles Freundii Gagella (from the Infectious Disease Control Center of the Institute for Disease Control and Prevention of the Academy of Military Medical Sciences), Enterococcus faecalis V309 carrying the VanA gene, Enterococcus faecalis-1, Enterococcus faecalis-2, Enterococcus faecalis-3, Enterococcus faecalis-4 , Enterococcus faecium-1, Enterococcus fae...
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