Chip and method for capturing target sequences of tumor susceptibility genes, and mutation detection method

A technology for capturing target sequences and susceptibility genes, which is applied in biochemical equipment and methods, microbial determination/inspection, etc., can solve the problems of multi-locus detection of difficult tumor susceptibility genes, low degree of automation, and complicated operation steps, etc. Achieving the effect of solving a wide mutation area, wide coverage and wide detection range

Active Publication Date: 2016-07-20
SHENZHEN HUADA GENE INST
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  • Application Information

AI Technical Summary

Problems solved by technology

Although the direct sequencing technology of PCR products has the advantages of being fast, simple, stable and economical, it also has disadvantages, such as low throughput, high cost, cumbersome operation steps, and low degree of automation, making it difficult to apply to tumor susceptibility genes on a large scale. multi-site detection

Method used

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  • Chip and method for capturing target sequences of tumor susceptibility genes, and mutation detection method
  • Chip and method for capturing target sequences of tumor susceptibility genes, and mutation detection method
  • Chip and method for capturing target sequences of tumor susceptibility genes, and mutation detection method

Examples

Experimental program
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Embodiment

[0077] Example: Detection of hereditary breast cancer susceptibility gene mutations based on chip capture combined with CompleteGenomics sequencing

[0078] 1. Purpose of the experiment

[0079] This embodiment detects and analyzes the SNP and Indel mutations of hereditary breast cancer susceptibility genes in the blood DNA of 34 cases of breast cancer patients (probands) with genetic predisposition, and confirms whether there is a causative effect of breast cancer-related susceptibility genes in this batch of samples. Disease mutation.

[0080] 2. Experimental materials

[0081] Sample information: 34 blood samples from breast cancer patients who meet the inclusion criteria of hereditary breast cancer. The detailed sample inclusion criteria are (only one of the following conditions must be met): (1) The age of breast cancer is ≤40 years old; ( 2) Male breast cancer patients, the age of onset is not limited; (3) Triple-negative breast cancer patients, the age of onset is not...

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Abstract

The invention discloses a chip and method for capturing target sequences of tumor susceptibility genes, and a mutation detection method. The chip is a liquid chip which binds with probe groups capable of simultaneously capturing at least 5, preferably at least at least 10, preferably at least at least 20, preferably at least at least 30, preferably at least at least 50, preferably at least at least 80, preferably at least at least 100, preferably at least at least a10, or preferably all of 115 genetic tumor susceptibility genes as shown in a table 1. The mutation detection method comprises a step of capturing the target sequences of the genetic tumor susceptibility genes by using the liquid chip and a step of carrying out sequencing by using G2 high-flux sequencing technology so as to find out mutation sites. The mutation detection method has the advantages of a wide application scope, high efficiency, comprehensiveness and easy operation, can detect replacement of a single base, insertion or deletion of a single base / multiple bases and deletion / amplification of large fragments and is capable of realizing high-efficiency comprehensive detection of common tumor susceptibility gene mutation.

Description

technical field [0001] The invention relates to the technical field of chip and sequencing, in particular to a chip for capturing a target sequence of a tumor susceptibility gene, a method and a mutation detection method. Background technique [0002] In recent years, the morbidity and mortality of malignant tumors (ie, cancer) in my country have been increasing, and malignant tumors have become a major public health problem in our country. The pathogenesis of tumors can be divided into three types: hereditary, familial, and sporadic. Among them, the incidence of hereditary tumors accounts for 5%-10% of the total incidence of tumors. Hereditary cancers arise from germline mutations in specific genes that are passed on in families, leading to an increased risk of cancer in offspring. Those genes that are prone to germline mutations are called hereditary cancer susceptibility genes . Individuals carrying inherited tumor susceptibility genes have several times or even dozens ...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68
Inventor 王晓宏周衍庆曹博洋叶晓飞朱师达管彦芳
Owner SHENZHEN HUADA GENE INST
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