Noninvasive antepartum fetal beta-thalassemia gene mutation detection library building method, detection method and kit

A library construction and thalassemia technology, applied in chemical libraries, biochemical equipment and methods, library creation, etc., can solve the problem of missing homozygous types, low plasma DNA content, and the inability to further determine the existence of maternal mutations, etc. problem, to achieve the effect of improving specificity

Inactive Publication Date: 2017-05-31
GENETALKS BIO TECH CHANGSHA CO LTD
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Problems solved by technology

However, these detection methods based on single-site PCR technology have certain limitations, such as the low content of plasma DNA and the characteristics of high fragmentation, which may cause false negatives in PCR.
This method can only detect the presence of specific paternal mutations that are different from the mother, but cannot further determine the presence or absence of maternal mutations
Whole-genome sequencing or target region capture sequencing of cell-free DNA in pregna...

Method used

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  • Noninvasive antepartum fetal beta-thalassemia gene mutation detection library building method, detection method and kit
  • Noninvasive antepartum fetal beta-thalassemia gene mutation detection library building method, detection method and kit
  • Noninvasive antepartum fetal beta-thalassemia gene mutation detection library building method, detection method and kit

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Embodiment

[0089] 1. For β-thalassemia gene mutation sites -90(C>T), -31(A>C), -30(T>C), -29(A>G), -28(A>G / C ), 5'UTR Cap+1(A>C), Initiation codon(ATG>AGG), CD14–15(+G), CD17(AAG>TAG), CD27 / 28(+C), CD31(–C) , CD37(TGG>TAG), CD41–42(–CTTT), CD43(GAG>TAG), CD71–72(+A / T), CD26(GAG>AAG), IVS–I–1(G>T) , IVS–I–5(G>C), IVS–II–654(C>T) designed synthetic primers:

[0090] The upstream primer and downstream primer are located on the left and right of the detection point, respectively. The 3' end of specific primer 1 and the 5' end of specific primer 2 on the same side overlap by 10-15 bases. The 5' end of specific primer 1 was modified with biotin. The 5' end of specific primer 2 contains adapter sequences for high-throughput sequencing libraries. Specifically, the primer sequences are shown in Table 1.

[0091] Table 1

[0092]

[0093]

[0094]

[0095] 2. Linker sequence with specific tag sequence and sample tag sequence (index):

[0096] ADT-F:

[0097] CAAGCAGAAGACGGCATACGAG...

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Abstract

The invention discloses a noninvasive antepartum fetal beta-thalassemia gene mutation detection library building method, a detection method and a kit. In the library building method, a specific connector is connected onto a maternal peripheral blood free DNA (deoxyribonucleic acid) fragment; then, a connector connection product pre-amplification product is divided into two parts; two rounds of specific amplification are performed by respectively and independently using forward primers and reverse primers aiming at target sites; the target sites can be enriched at high specificity; the amplification specificity of the primers can be obviously improved. The forward and reverse primer groups of a plurality of SNP (single nucleotide polymorphism) sites used for calculating the fetal free DNA proportion are respectively used for performing two-round specific amplification; the fetal free DNA proportion can be efficiently and accurately calculated. The library is subjected to sequence testing; the beta-thalassemia gene mutation can be accurately and effectively detected; the result is identical to the result of the amniocentesis detection and typing; the safety, the noninvasion and the high efficiency are obviously superior to those of the amniocentesis detection.

Description

technical field [0001] The invention relates to the technical field of gene detection, in particular to a method for constructing a non-invasive prenatal fetal β-thalassemia gene mutation detection library, a detection method and a kit. Background technique [0002] Thalassemia (referred to as thalassemia) is one of the most common genetic diseases in the world. It is a hemolytic anemia caused by an imbalance in the synthesis rate of α, β-globin peptide chains due to human gene mutation or deletion. The two common types of thalassemia are α-thalassemia and β-thalassemia, α-thalassemia-related genes are HBA2 and HBA1, and β-thalassemia-related genes are HBB. Thalassemia is concentrated in tropical and subtropical regions, mostly in Mediterranean countries, followed by the Middle East, India, Pakistan, Southeast Asia, southern China and North Africa. The United States is an immigrant country, and its incidence is also relatively high. The provinces south of the Yangtze River ...

Claims

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Application Information

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IPC IPC(8): C12Q1/68C40B50/06
CPCC12N15/1093C12Q1/6806C12Q1/6869C40B50/06C12Q2531/113C12Q2525/191C12Q2535/122
Inventor 王晓锋曾华萍宋卓
Owner GENETALKS BIO TECH CHANGSHA CO LTD
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