Extensible large-scale biomedical sample management and visualization platform

A biomedical and large-scale technology, applied in the field of biology or medicine, can solve the problems of not being able to freely select search items and search forms, difficult to meet various needs of users, and those who cannot provide search sample results, etc., to achieve convenient distributed The expansion of deployment and storage, the realization of statistics and visualization, and the effect of fast operation

Active Publication Date: 2019-04-19
HARBIN INST OF TECH
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0006] In most sample databases, the search form is relatively simple, and only certain items or certain conditions can be used to search, and the search items and search forms cannot be freely selected, and sometimes it is difficult to meet the various needs of users
In terms of search results, there is also a lack of corresponding statistics and visualization, which cannot provide system users with a more vivid and overall grasp of search sample results

Method used

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  • Extensible large-scale biomedical sample management and visualization platform

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specific Embodiment 1

[0026] An expandable large-scale biomedical sample management and visualization platform is characterized in that: the platform includes a sample statistics module, a visualization module, a retrieval module and a mongodb database, and the platform is connected to the mongodb database.

[0027] The platform uses a non-relational database mongodb to be responsible for data storage and management, and mongodb is responsible for adding new sample data and other operations. According to the current demand, there is only one database server in the cluster. In the future, the number of database servers in the cluster can be further increased to expand data storage according to the increase in data volume and the improvement of operating efficiency requirements. At the same time, further data backup and load balancing can be performed. Further improve system reliability and availability.

[0028] The platform enables quality control of samples. In the process of sample storage, the ...

specific Embodiment 2

[0031] A scalable large-scale biomedical sample management and visualization platform operation method, comprising the following steps:

[0032] Step 1: The user logs in to the scalable large-scale biomedical sample management and visualization platform for identity and authority verification;

[0033] Step 2: After the user completes the authority verification, the user adds data information to the platform and uploads it;

[0034] Step 3: Perform quality inspection on the added data information, the data information that fails the quality inspection is not stored in the mongodb database and returned to the customer to correct the error, and the data information that passes the quality inspection is stored in the mongodb database;

[0035] Step 4: The user comprehensively searches the sample information in the mongodb database through multiple conditions, and checks the statistics of the search results.

[0036] Step 5: After the retrieval is completed, the scalable large-sc...

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Abstract

The invention is an extensible large-scale biomedical sample visualization platform. The platform comprises a sample statistics module, a visualization module, a retrieval module and a mongodb database system. And the user logs in the platform to carry out identity and authority verification, and after the user completes the authority verification, the user adds data information to the platform and uploads the data information. And carrying out quality inspection on the added data information, and storing the data information passing the quality inspection into a mongodb database system. And the user comprehensively retrieves the sample information existing in the mongodb database through multiple conditions, and checks the statistics of the retrieval result. And after the retrieval is completed, the platform counts the sample search results and presents the sample search results to the user in the forms of a visual chart and the like. Aiming at mass biomedical samples, more convenientdistributed deployment and extensible storage are realized, more convenient operation can be provided, and the biomedical sample management and use efficiency is greatly improved.

Description

technical field [0001] The invention relates to the field of biology or medicine, and is an expandable large-scale biomedical sample management and visualization platform. Background technique [0002] With the rapid development of modern biomedicine, there are more and more biomedical data, and a key part of the data is the data about biomedical samples. These data are all derived from real organisms, and will be of great significance for research in the fields of medicine and biology. Therefore, the management of biomedical samples is an issue worthy of attention. [0003] At present, most of the management or retrieval platforms for biological and medical related information in China are based on literature management, and there is a lack of management platforms specifically for biomedical samples. Therefore, the biomedical sample management platform established in this patent can better manage sample information. management and help researchers make better use of relev...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): G06F16/21G06F16/28G06F16/215G06F16/248G06F16/242
Inventor 臧天仪刘春圃
Owner HARBIN INST OF TECH
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