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iPSC residue detection method using ESRG gene as universal marker gene

A detection method and a general-purpose labeling technology, applied in the determination/inspection of microorganisms, biochemical equipment and methods, DNA/RNA fragments, etc., can solve the problems of high cost, easy differentiation of iPSC, false positives, etc., and achieve low cost and improved High detection efficiency and accuracy

Inactive Publication Date: 2020-11-27
ALLIFE MEDICAL SCI & TECH CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

But this approach is often targeted to specific functional cells and is not always applicable to functional cells
For example, studies have shown that lin28A cannot detect iPSC cell residues in iPSC-induced hepatocytes, endothelial progenitor cells, and islet bodies.
[0008] In addition, the detection methods in the prior art also have the disadvantages of low detection efficiency and high cost.
However, in the detection method expanded by cell culture, there are still problems that cells at too low a concentration are not easy to survive and iPSCs are easy to differentiate and cause false positives.

Method used

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  • iPSC residue detection method using ESRG gene as universal marker gene
  • iPSC residue detection method using ESRG gene as universal marker gene
  • iPSC residue detection method using ESRG gene as universal marker gene

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0047] Example 1 ESRG gene is used as the validation test of universal marker gene

[0048] (1) Screen candidate genes: Search the expression of a series of genes in different human tissues through GTEx Portal official website, and screen candidate genes. The criteria for candidate genes are genes that are not expressed in human tissue cells, or are only expressed in a very small number of cells. figure 1 is the expression level (TPM) of each gene in different human tissues, according to figure 1 As shown, ESRG, lin28A and NANOG meet the above screening criteria, wherein ESRG and lin28A are only expressed in human reproductive organs; NANOG is not expressed in the tested tissues.

[0049] (2) Detect the expression levels of candidate genes in iPSCs and ESCs: the ESCs used are embryonic stem cells H9; first, the mRNA of iPSCs and embryonic stem cells H9 is extracted by the above-mentioned method of total mRNA extraction, and then the iPSCs and H9 are extracted by the above-men...

Embodiment 2

[0053] Example 2 Detection of iPSC residues in iPSC-derived iEPCs

[0054] (1) Design the structure of the ESRG marker gene: look up the cDNA sequence of ESRG by NCBI, and the nucleotide sequence list is as shown in sequence SEQ ID NO:1 (

[0055]

[0056]

[0057] ), the sequence length is 3153bp. Randomly select a sequence greater than 200bp as the target gene sequence constructed by the standard, and design primers according to the target gene sequence, wherein the length of the target gene sequence is greater than or equal to the length amplified by the primer; the ESRG cDNA target selected in this embodiment The sequence length is 338bp, and its nucleotide sequence is shown in the sequence SEQ ID NO: 2 ( ). In this embodiment, the primers are the above-mentioned ESRG upstream primer (ESRG-F) and ESRG downstream primer (ESRG-R).

[0058] In this embodiment, the standard product is plasmid DNA containing the ESRG target gene sequence; the advantage of ...

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Abstract

The invention provides an iPSC residue detection method using ESRG gene as a universal marker gene. According to the iPSC residue detection method using the ESRG gene as the universal marker gene, thenumber of the ESRG genes in a sample is quantitatively detected through a qPCR detection method, so that iPSC residues in the sample are detected. According to the method, an ESRG gene segment is adopted as the universal marker gene, a series of cells including endothelial progenitor cells, neural stem cells, retinal pigment epitheliums, hepatocytes, natural killer cells, myocardial cells, isletbodies and the like can be detected, and the marker gene does not need to be replaced; and meanwhile, detection can be carried out in a short time, and the detection efficiency is greatly improved. According to the method, during detection, only mRNA extraction, reverse transcription and qPCR reagents are needed, the cost is low, and the accuracy is high.

Description

technical field [0001] The invention relates to an iPSC residual detection method using ESRG gene as a universal marker gene, belonging to the field of biotechnology. Background technique [0002] Induced pluripotent stem cells (iPSCs) are a type of pluripotent cells with self-renewal and self-replication capabilities. It can differentiate into all cells in the body, and then form all tissues and organs of the body. The advent of induced pluripotent stem cell (iPSC) technology has paved the way for regenerative medicine therapies. In theory, iPSCs can differentiate into any type of cell in our body, and scientists have developed various protocols to differentiate iPSCs into specific cell types, including nerve cells, cardiomyocytes, endothelial cells, retinal pigment epithelial cells, pancreatic islets bodies and hepatocytes, etc. In addition, iPSCs have also been widely used in organoid technology. [0003] iPSCs have the ability to proliferate indefinitely and can form...

Claims

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Application Information

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IPC IPC(8): C12Q1/6851C12N15/11
CPCC12Q1/6851C12Q2531/113C12Q2545/114
Inventor 吴理达顾雨春冯铁军
Owner ALLIFE MEDICAL SCI & TECH CO LTD
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