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Assay methods and systems

a technology applied in the field of assay methods and systems, can solve the problems of inability to readily detect optically different reagents, and inability to readily distinguish reagents and/or products from each other, etc., to achieve the effect of increasing the level of fluorescence polarization

Inactive Publication Date: 2007-07-12
CAPLIPER LIFE SCI INC
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

The present invention provides methods, systems, kits, and assay systems for carrying out various assays using fluorescent labels. These assays include detecting reactions, identifying the presence of specific nucleotides, and detecting phosphorylation. The methods involve mixing reagents and a polyion, and measuring the fluorescence polarization to determine the reaction. The systems include a detection zone and a detector for measuring the fluorescence polarization. The kits include a volume of reagents and instructions for carrying out the assay. The invention allows for the efficient and accurate detection of reactions and provides a reliable method for measuring the reaction parameters.

Problems solved by technology

Unfortunately, many reactions of particular interest do not have the benefit of having a readily available surrogate reagent that produces signal only when subjected to the reaction of interest.
However, even when one member of the binding pair is labeled, the formation of the complex does not generally give rise to an optically detectable difference between the complex and the labeled molecule.
Similarly, there are a number of other assays whose reagents and / or products cannot be readily distinguished from each other, even despite the incorporation of optically detectable elements.
As should be apparent, assays requiring additional separation steps can be extremely time consuming and less efficient, as a result of losses during the various assay steps.

Method used

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  • Assay methods and systems
  • Assay methods and systems
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Examples

Experimental program
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Effect test

example 1

Detection of Phosphorylated Product by Fluorescent Polarization

[0109] An aliquot of a neutrally charged phosphorylatable substrate (Flourescein-QSPKKG-CONH2) was incubated overnight with ATP and CDK2 (cyclin dependent kinase). The mixture was analyzed by standard capillary electrophoresis methods and showed complete conversion of substrate to product. A negative control (no enzyme) was also prepared. The two reaction mixtures were diluted in 50 mM TAPS pH 9.0 buffer (1:40). The fluorescence polarization values were measured by exciting the samples at 490 nm and measuring emitted fluorescence at 520 nm in a cuvette of a fluorimeter equipped to measure fluorescence polarization. Aliquots of a poly-D-Lysine solution and water were added (each added aliquot increased the poly-D-Lysine concentration by 6 μM). The results of the assay are illustrated in FIG. 12 which plots the fluorescent polarization of the sample versus the amount of poly-D-lysine added.

[0110] As shown, the fluorescen...

example 2

Differentiation of Product Concentrations Using Fluorescence Polarization

[0111] Additional experiments were carried out using poly-histidine in place of polylysine. In this case, the buffer used was 50 mM BisTris pH 6.5; the molecular weight of the polyhistidine used was 15800 daltons (available from Sigma Chemical, St. Louis, Mo.).

[0112] Mixtures containing varying ratios of the substrates and products of two serine / threonine kinases were prepared, CDK2 and Protein Kinase A (PKA). The CDK substrate was the same as that described for Example 1, above. The PKA substrate was: Fluor-LRRASLG where the C-terminus was either a carboxyl group or a carboxamide group. These mixtures were used as models for kinase reactions at varying degrees of substrate conversion. To these mixtures of substrate and product were added aliquots of a polyhistidine solution and water. The concentration of this aqueous stock was approximately 1.3 mM, and the final concentration was between 10 and 25 mM.

[0113...

example 3

Nucleic Acid Hybridization Assay Using Fluorescence Polarization Detection

[0114] The assay methods were also employed in the detection of a nucleic acid hybridization reaction. This assay is particularly interesting due to the lack of an immobilized target sequence that was to be interrogated. In particular, the entire assay was carried out in solution.

[0115] A fluorescein-labeled peptide nucleic acid molecule 202 was used in hybridization experiments with the DNA targets 192 and 182. PNAs are generally commercially available from the Applied Biosystems Division of the Perkin-Elmer Corporation (Foster City, Calif.). The sequence of these molecules is illustrated below. In the case of the PNA molecule, the given sequence illustrates the analogous sequence of a DNA molecule. The sequences of the three molecules are as follows:

202:5′ F1-O-GTCAAATACTCCA(SEQ. ID NO:1)192:5′ ATGGGCTGGAGTATTTGACCTAATT(SEQ. ID NO:2)182:5′ CGCTGTGGATGCTGCCTGA(SEQ. ID NO:3)

[0116] DNA sequence 192 contains...

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Abstract

Methods, systems, kits for carrying out a wide variety of different assays that comprise providing a first reagent mixture which comprises a first reagent having a fluorescent label. A second reagent is introduced into the first reagent mixture to produce a second reagent mixture, where the second reagent reacts with the first reagent to produce a fluorescently labeled product having a substantially different charge than the first reagent. A polyion is introduced into at least one of the first and second reagent mixtures, and the fluorescent polarization in the second reagent mixture relative to the first reagent mixture is determined, this fluorescent polarization being indicative of the rate or extent of the reaction.

Description

CROSS REFERENCE TO RELATED APPLICATION [0001] This application is a division of U.S. patent application Ser. No. 10,397,887, filed Mar. 26, 2003, which is a continuation of U.S. patent application Ser. No. 09 / 865,044, filed May 24, 2001, now U.S. Pat. No. 6,699,655, which is a continuation of U.S. patent application Ser. No. 09 / 316,447, filed May 21, 1999, now U.S. Pat. No. 6,287,774, each of which are incorporated herein in its entirety for all purposes.BACKGROUND OF THE INVENTION [0002] Virtually all chemical, biological and biochemical research depends upon the ability of the investigator to determine the direction of her research by assaying reaction mixtures for the presence or absence of a particular chemical species within the reaction mixture. In a simple case, the rate or efficiency of a reaction is assayed by measuring the rate of production of the reaction product, or the depletion of a reaction substrate. Similarly, interactive reactions, e.g., binding or dissociation re...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): C12Q1/48C12Q1/37C12Q1/42C12Q1/68C12Q1/6816G01N33/542
CPCC12Q1/37C12Q1/42C12Q1/48C12Q1/485C12Q1/6816G01N2333/9121G01N33/542C12Q2565/107C12Q2563/107
Inventor NIKIFOROV, THEO T.
Owner CAPLIPER LIFE SCI INC
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