Assay methods and systems
a technology applied in the field of assay methods and systems, can solve the problems of inability to readily detect optically different reagents, and inability to readily distinguish reagents and/or products from each other, etc., to achieve the effect of increasing the level of fluorescence polarization
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example 1
Detection of Phosphorylated Product by Fluorescent Polarization
[0109] An aliquot of a neutrally charged phosphorylatable substrate (Flourescein-QSPKKG-CONH2) was incubated overnight with ATP and CDK2 (cyclin dependent kinase). The mixture was analyzed by standard capillary electrophoresis methods and showed complete conversion of substrate to product. A negative control (no enzyme) was also prepared. The two reaction mixtures were diluted in 50 mM TAPS pH 9.0 buffer (1:40). The fluorescence polarization values were measured by exciting the samples at 490 nm and measuring emitted fluorescence at 520 nm in a cuvette of a fluorimeter equipped to measure fluorescence polarization. Aliquots of a poly-D-Lysine solution and water were added (each added aliquot increased the poly-D-Lysine concentration by 6 μM). The results of the assay are illustrated in FIG. 12 which plots the fluorescent polarization of the sample versus the amount of poly-D-lysine added.
[0110] As shown, the fluorescen...
example 2
Differentiation of Product Concentrations Using Fluorescence Polarization
[0111] Additional experiments were carried out using poly-histidine in place of polylysine. In this case, the buffer used was 50 mM BisTris pH 6.5; the molecular weight of the polyhistidine used was 15800 daltons (available from Sigma Chemical, St. Louis, Mo.).
[0112] Mixtures containing varying ratios of the substrates and products of two serine / threonine kinases were prepared, CDK2 and Protein Kinase A (PKA). The CDK substrate was the same as that described for Example 1, above. The PKA substrate was: Fluor-LRRASLG where the C-terminus was either a carboxyl group or a carboxamide group. These mixtures were used as models for kinase reactions at varying degrees of substrate conversion. To these mixtures of substrate and product were added aliquots of a polyhistidine solution and water. The concentration of this aqueous stock was approximately 1.3 mM, and the final concentration was between 10 and 25 mM.
[0113...
example 3
Nucleic Acid Hybridization Assay Using Fluorescence Polarization Detection
[0114] The assay methods were also employed in the detection of a nucleic acid hybridization reaction. This assay is particularly interesting due to the lack of an immobilized target sequence that was to be interrogated. In particular, the entire assay was carried out in solution.
[0115] A fluorescein-labeled peptide nucleic acid molecule 202 was used in hybridization experiments with the DNA targets 192 and 182. PNAs are generally commercially available from the Applied Biosystems Division of the Perkin-Elmer Corporation (Foster City, Calif.). The sequence of these molecules is illustrated below. In the case of the PNA molecule, the given sequence illustrates the analogous sequence of a DNA molecule. The sequences of the three molecules are as follows:
202:5′ F1-O-GTCAAATACTCCA(SEQ. ID NO:1)192:5′ ATGGGCTGGAGTATTTGACCTAATT(SEQ. ID NO:2)182:5′ CGCTGTGGATGCTGCCTGA(SEQ. ID NO:3)
[0116] DNA sequence 192 contains...
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