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Yeast microorganisms with reduced by-product accumulation for improved production of fuels, chemicals, and amino acids

a technology of by-product accumulation and yeast microorganisms, which is applied in the field of yeast microorganisms with reduced by-product accumulation for improving the production of fuels, chemicals, and amino acids, can solve the problems of reducing the optimal productivity and yield of 3-keto acid- and/or aldehyde-derived products, and achieves enhanced catalytic efficiency of modified adh enzyme, enhanced ability to convert isobutyraldehyde, and enhanced catalytic efficiency of modified adh

Inactive Publication Date: 2011-08-18
GEVO INC
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

[0179]Further, by utilizing a modified ADH enzyme, the present inventors may establish a situation in which the forward reaction (i.e. the isobutyraldehyde conversion to isobutanol) is the favored reaction over the reverse reaction (i.e. the conversion of isobutanol to isobutyraldehyde).

Problems solved by technology

The accumulation of these unwanted by-products results from the undesirable conversion of pathway intermediates including the 3-keto acids, acetolactate and 2-aceto-2-hydroxybutyrate, and / or aldehydes, such as isobutyraldehyde, 1-butanal, 1-propanal, 2-methyl-1-butanal, and 3-methyl-1-butanal.
The conversion of these intermediates to unwanted by-products can hinder the optimal productivity and yield of a 3-keto acid- and / or aldehyde-derived products.

Method used

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  • Yeast microorganisms with reduced by-product accumulation for improved production of fuels, chemicals, and amino acids
  • Yeast microorganisms with reduced by-product accumulation for improved production of fuels, chemicals, and amino acids
  • Yeast microorganisms with reduced by-product accumulation for improved production of fuels, chemicals, and amino acids

Examples

Experimental program
Comparison scheme
Effect test

example 1

Increased Isobutanol / Isobutyrate Ratio by Increasing ADH Activity in S. cerevisiae

[0366]The purpose of this example is to demonstrate that increased alcohol dehydrogenase activity results in an increased isobutanol yield, a decreased isobutyrate yield, and an increase in the ratio of isobutanol yield to isobutyrate yield.

[0367]Strains and plasmids disclosed in this example are shown in Tables 7 and 8, respectively.

TABLE 7Genotype of Strains Disclosed in Example 1.GEVO NumberGenotypeGEVO2843S. cerevisiae, MATa ura3 leu2 his3 trp1pdc1Δ::PCUP1:[Bs_alsS1_coSc:TCYC1: PPGK1:Ll_kivD2: PENO2: Sp_HIS5]pdc5Δ::[LEU2: bla: PTEF1: ILV3ΔN: PTDH3:EC_ilvC_coScQ110V]pdc6Δ::[URA3: bla: PTEF1: Ll_kivD2: PTDH3:Dm_ADH]{evolved for C2 supplement-independence, glucosetolerance and faster growth}

TABLE 8Plasmids Disclosed in Example 1.Plasmid NameRelevant Genes / UsageGenotypepGV20112μ plasmid expressingPTDH3:Ec_ilvC_coScQ110V,KARI, and DHADPTEF1:Ll_ilvD_coSc,2μ ori, bla, G418RpGV24852μ plasmid expressingPTD...

example 2

Further Increased Isobutanol / Isobutyrate Ratio by Use of Variant ADH Ll_AdhARE1 in S. cerevisiae

[0373]The purpose of this example is to demonstrate that expression of an alcohol dehydrogenase with increased kcat and decreased KM results in a further increase in isobutanol yield, decrease in isobutyrate yield, and increase in the ratio of isobutanol yield to isobutyrate yield.

TABLE 11Genotype of Strains Disclosed in Example 2.GEVONumberGenotypeGEVO2843S. cerevisiae, MATa ura3 leu2 his3 trp1pdc1Δ::PCUP1:[Bs_alsS1_coSc:TCYC1: PPGK1: Ll_kivD2:PENO2: Sp_HIS5]pdc5Δ::[LEU2: bla: PTEF1: ILV3ΔN: PTDH3:Ec_ilvC_coScQ110V]pdc6Δ::[URA3: bla: PTEF1: Ll_kivD2:PTDH3: Dm_ADH]{evolved for C2 supplement-independence, glucosetolerance and faster growth}

TABLE 12Plasmids Disclosed in Example 2.Plasmid NameRelevant Genes / UsageGenotypepGV25432μ plasmid expressingPTDH3:Ec_ilvC_coScQ110V,KARI, DHAD, KIVD,PTEF1:Ll_ilvD_coSc,and ADHPPGK1:Ll_kivD_coEc,(Ll_AdhAhis6)PENO2: Ll_AdhAhis6,2μ ori, bla, G418RpGV25452μ...

example 3

Further Increased Isobutanol / Isobutyrate Ratio in S. cerevisiae by Expression of RE1

[0378]The purpose of this example is to demonstrate that expression of an alcohol dehydrogenase with increased kcat and decreased KM results in an increase in isobutanol yield and a decrease in isobutyrate yield in fermentations performed in fermenter vessels.

[0379]A fermentation was performed to compare performance of S. cerevisiae strains GEVO3519 and GEVO3523. Isobutanol and isobutyrate titers and yields were measured during the fermentation. GEVO3519 carries a 2μ plasmid pGV2524 that contains genes encoding the following enzymes: KARI, DHAD, KIVD and his-tagged, codon-optimized wild-type Lactococcus lactis ADH. GEVO3523 carries a 2μ plasmid pGV2524 that contains genes encoding the following enzymes: KARI, DHAD, KIVD and an improved variant of the his-tagged, codon-optimized Lactococcus lactis ADH having decreased KM and increased kcat. These strains were evaluated for isobutanol, isobutyraldehyde...

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Abstract

The present invention relates to recombinant microorganisms comprising biosynthetic pathways and methods of using said recombinant microorganisms to produce various beneficial metabolites. In various aspects of the invention, the recombinant microorganisms may further comprise one or more modifications resulting in the reduction or elimination of 3 keto-acid (e.g., acetolactate and 2-aceto-2-hydroxybutyrate) and / or aldehyde-derived by-products. In various embodiments described herein, the recombinant microorganisms may be microorganisms of the Saccharomyces clade, Crabtree-negative yeast microorganisms, Crabtree-positive yeast microorganisms, post-WGD (whole genome duplication) yeast microorganisms, pre-WGD (whole genome duplication) yeast microorganisms, and non-fermenting yeast microorganisms.

Description

CROSS REFERENCE TO RELATED APPLICATIONS[0001]This application claims priority to U.S. Provisional Application Ser. No. 61 / 304,069, filed Feb. 12, 2010; U.S. Provisional Application Ser. No. 61 / 308,568, filed Feb. 26, 2010; U.S. Provisional Application Ser. No. 61 / 282,641, filed Mar. 10, 2010; U.S. Provisional Application Ser. No. 61 / 352,133, filed Jun. 7, 2010; U.S. Provisional Application Ser. No. 61 / 411,885, filed Nov. 9, 2010; and U.S. Provisional Application Ser. No. 61 / 430,801, filed Jan. 7, 2011, each of which is herein incorporated by reference in its entirety for all purposes.ACKNOWLEDGMENT OF GOVERNMENTAL SUPPORT[0002]This invention was made with government support under Contract No. 2009-10006-05919, awarded by the United States Department of Agriculture, and under Contract No. W911 NF-09-2-0022, awarded by the United States Army Research Laboratory. The government has certain rights in the invention.TECHNICAL FIELD[0003]Recombinant microorganisms and methods of producing ...

Claims

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Application Information

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IPC IPC(8): C12N1/00
CPCC12N9/0006C12P7/16C12Y101/01C12N15/81C12Y102/01005Y02E50/10C12N9/0004C12N1/00C12N1/18C12N15/52Y02P20/52
Inventor BUELTER, THOMASHAWKINS, ANDREWPORTER-SCHEINMAN, STEPHANIEMEINHOLD, PETERDUNDON, CATHERINE ASLESONARISTIDOU, ARISTOSURANO, JUNLIES, DOUGPETERS, MATTHEWDEY, MELISSAJANCAUSKAS, JUSTASEVANS, KENTKELLY, JULIEBERRY, RUTH
Owner GEVO INC
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