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Fourteen-food-borne pathogenic bacterium multiplex PCR detection primer set and kit

A food-borne pathogenic bacteria and primer set technology, applied in the field of microbial detection, can solve the problems of affecting the sensitivity of detection reagents, large investment, cumbersome operation, etc.

Active Publication Date: 2014-01-01
北京卓诚惠生生物科技股份有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0006] The multiplex PCR technology based on the liquid chip detection platform and the multifinder multiplex PCR technology based on double-probe hybridization can realize the rapid screening of multiple detection targets, but currently none of these technologies can detect 14 kinds of food-borne pathogens The microbial kit was successfully developed
Moreover, the multiplex PCR technology based on the liquid-phase chip detection platform performs the PCR reaction in two steps in a PCR reaction tube, and the design of low-concentration specific primers in the first round of PCR leads to a significant decrease in the sensitivity of the PCR reaction, thereby affecting the sensitivity of the entire detection reagent; There is a problem of poor stability in the detection of PCR products by multi-color microsphere labeling
Moreover, the purchase cost of the instrument is high, and the reagent consumables are expensive
[0007] The multifinder multiplex PCR technology based on double-probe hybridization uses two adjacent specific probes to hybridize, which improves the detection specificity and affects the sensitivity of the screening, which is prone to false negative results; this technology uses a next-generation sequencing platform to detect PCR products , such as ABI3130, ABI3500, etc., the reagent consumables are expensive; the detection process goes through steps such as nucleic acid extraction, double-probe hybridization, probe connection, PCR amplification, and product analysis. Use of next-generation sequencing platforms
[0008] Although the multiplex PCR technology based on the arm-PCR principle solves the problems of operation automation and product contamination, the technology requires a large investment and expensive consumables

Method used

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  • Fourteen-food-borne pathogenic bacterium multiplex PCR detection primer set and kit
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  • Fourteen-food-borne pathogenic bacterium multiplex PCR detection primer set and kit

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0092] The primer design and synthesis of embodiment 1 Salmonella

[0093] Download 65 full-length sequences of Salmonella invA genes from Genbank, import the 65 full-length sequences of invA genes into the Mega4 software, use the alignment function to compare and analyze the conserved sequences of the invA genes, and obtain conserved sequence segments. The base sequence is as follows: Listed as shown in SEQ ID No.32.

[0094]The above-mentioned conserved sequence of the invA gene was input into the primer premier6 software, and various primer design schemes were obtained by automatic analysis. On this basis, the primer position and sequence length were manually adjusted, the Tm value was set at 55±5°C, the GC content was 35%-60%, and hairpin structures and primer dimers were not generated as much as possible, and no false priming occurred. Perform Blast analysis on the primer design plan obtained by the above manual adjustment on the NCBI website. If any primer pair has cros...

Embodiment 2

[0099] Embodiment 2 Salmonella primer screening test

[0100] Bacterial groups assessed for specificity: including Shigella, Vibrio parahaemolyticus, Campylobacter jejuni, Campylobacter coli, Staphylococcus aureus, Bacillus cereus, Listeria monocytogenes, Enterocolitis Fourteen kinds of detection target bacteria in the kit, including Yersinia, Enterobacter sakazakii, Escherichia coli, Vibrio cholerae, Escherichia coli O157, Aeromonas hydrophila, etc. Bacteria with similar target species and the same living environment, such as Vibrio river, Bacillus anthracis, Bacillus wesleyi, Listeria ovis, Bordetella pertussis, Legionella, and Streptococcus.

[0101] For the above-mentioned bacteria, a bacterial genome extraction kit was used to obtain DNA templates for future use. Take 5ul of each extracted template and mix well, as the template for specificity verification.

[0102] Specific analysis test for Salmonella: use the primer pair designed in Example 1, configure the PCR react...

Embodiment 314

[0112] Example 314 Formation of multiple PCR detection kits for common food-borne pathogenic microorganisms

[0113] The kit consists of 2× reaction system buffer, DNA polymerase, 10× primer mixture, positive control, and deionized water. The specific components are as follows: 2×PCR Buffer (Tris HCl 40mM (PH8.3), KCl 100mM, tween-200.08%, 0.0006ng / ulpET28a, 1mm dNTP, 8mm MgCl2); 25× DNA polymerase: 2U / ul; 10× primer mixture (including specific primers and IAC primers, according to the detection purpose and electrophoresis platform Determine the type of primer mixture and the number of tubes), positive control (14 kinds of food-borne pathogenic bacteria mixed template, 10 for each 6 CFU / ml).

[0114] The reaction system for kit detection is 25ul, and its configuration is as follows: 2×PCR Buffer12.5ul; 25×DNA polymerase 1ul; 10×primer mixture (determine the type of primer mixture and the number of tubes according to the detection purpose and electrophoresis platform) 2.5 ul;...

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Abstract

The invention discloses a fourteen-food-borne pathogenic bacterium multiplex PCR detection primer set and a kit. The detection primer set is composed of primer pairs for detecting salmonella, Shigella, Vibrio parahemolyticus, campylobacter jejuni, campylobacter coli, staphylococcus aureus, bacillus cereus, Listeria monocytogenes, yersinia enterocolitica, enterobacter sakazakii, Escherichia coli, vibrio cholerae, Escherichia coli O157, aeromonas hydrophila and internal positive control. A multiplex PCR detection method based on an ordinary PCR platform is built, multiplex PCR reactions are carried out on genomic DNA, extracted from a sample to be tested, of bacteria in the same reaction system through the primer pairs acquired through analysis and design, and whether the food-borne pathogenic bacteria are contained in the sample or not is judged through the electrophoretic analysis of reaction products.

Description

technical field [0001] The invention belongs to the field of microorganism detection, and relates to a multiplex rapid PCR detection primer set and a kit for fourteen kinds of food-borne pathogenic bacteria. Background technique [0002] Foodborne pathogenic microorganisms are an important biological factor causing food poisoning. With the country's emphasis on food safety, rapid screening of food poisoning causes has become a top priority. The design of the kit of the present invention can be used to screen common diarrhea-causing food-borne microorganisms, including Salmonella, Shigella, Vibrio parahaemolyticus, Campylobacter jejuni, Campylobacter coli, Staphylococcus aureus, cereus Bacillus, Listeria monocytogenes, Yersinia enterocolitica, Enterobacter sakazakii, Escherichia coli, Vibrio cholerae, Escherichia coli O157 and Aeromonas hydrophila , a total of 14 kinds of foodborne pathogenic microorganisms, the test samples come from clinical specimens or the enrichment so...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68C12Q1/14C12Q1/10C12Q1/04C12N15/11
CPCC12Q1/04C12Q1/10C12Q1/14C12Q1/686C12Q2537/143C12Q2531/113Y02A50/30
Inventor 王雷王晓艳张志强
Owner 北京卓诚惠生生物科技股份有限公司
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