Method for detecting heterozygous dmd gene deletion and primers used

A technology of gene deletion and heterozygosity, applied in the field of molecular biology, can solve problems such as large false negatives and inability to detect unknown regions.

Active Publication Date: 2018-10-16
CHONGQING DIAN SRAB CENT FOR CLINICAL LAB CO LTD
View PDF1 Cites 0 Cited by
  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

The current MLPA method can detect deletions and duplications, but there are large false negatives, while using next-generation sequencing, it can detect point mutations and small deletions and insertions within 20bp, while heterozygous large deletions and duplications are not helpless
The qPCR method can only verify known deletion mutations, but cannot detect deletions in unknown regions.

Method used

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
View more

Image

Smart Image Click on the blue labels to locate them in the text.
Viewing Examples
Smart Image
  • Method for detecting heterozygous dmd gene deletion and primers used
  • Method for detecting heterozygous dmd gene deletion and primers used
  • Method for detecting heterozygous dmd gene deletion and primers used

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0049]Embodiment 1, apply the present invention, detect the DMD gene of 1 case of DMD male patient, 1 case of DMD patient's mother and 1 case of normal male.

[0050] 1. Experimental methods and steps

[0051] 1. Sample collection from DMD patients and their family members: 2ml of blood was taken with EDTA anticoagulation from DMD patients diagnosed in a hospital. The genomic DNA in the blood was extracted with the Qiagen DNeasy Blood Tissue Kit (Germany Quick and Fine, Cat. No. 69506), and the Nanodrop concentration was 50 ng / ul. At the same time, the samples of the DMD patient and his family members have been verified by the MLPA method of Shanghai Jikang Biotechnology Co., Ltd. to be only the deletion of exon 51 of DMD.

[0052] 2. Obtain the sequence of each exon of the DMD gene from the NCBI data, and design primers (primer5 software can be used). The primers are shown in Table 1. The primers are synthesized by Yingwei Jieji (Shanghai) Trading Co., Ltd., and purified by ...

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to view more

PUM

No PUM Login to view more

Abstract

The invention discloses primers for detecting heterozygosity DMD gene deletion. The primers are special primers which are designed for 79 exon regions of a DMD gene and have products of 370-400 bp. Each pair of specificity primers at least have 20 bp of overlapping regions, a universal sequence and 5 continuous N basic groups are designed at the end 5' of each specificity primer, and the primers are named as labels. The invention further provides a method for detecting heterozygosity DMD gene deletion through the primers. On the basis of second-generation sequencing, by means of the method, the homozygosis and heterozygosity deletion can be detected, and therefore a carrier of the DMD genetic disease can be effectively detected, and pregnant women are guided to give birth to healthy infants through antenatal diagnosis, test tube babies and other methods.

Description

technical field [0001] The invention belongs to the field of molecular biology, and in particular relates to a method for detecting gene deletion mutations based on next-generation sequencing. Background technique [0002] DMD (Duchenne Muscular Dystrophy) is a serious neuromuscular genetic disease, an X-linked recessive genetic disease, generally known as Duchenne muscular dystrophy or pseudohypertrophic progressive muscular dystrophy in China. The incidence is more complicated, about 65% are related to genetics, and 35% are caused by individual mutations. DMD is the most common form of muscular dystrophy. There is also a benign subtype called BMD (Becker Muscular Dystrophy), known as Becker Muscular Dystrophy. Because part of the incomplete dystrophin can be retained in the body, patients usually have symptoms later (5-15 years old), with mild clinical manifestations, relatively slow development, and a longer course of disease than DMD. About 3,000 new cases of DMD are a...

Claims

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to view more

Application Information

Patent Timeline
no application Login to view more
Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/6883C12N15/11
CPCC12Q1/6883C12Q2600/156
Inventor 洪旭涛祁鸣
Owner CHONGQING DIAN SRAB CENT FOR CLINICAL LAB CO LTD
Who we serve
  • R&D Engineer
  • R&D Manager
  • IP Professional
Why Eureka
  • Industry Leading Data Capabilities
  • Powerful AI technology
  • Patent DNA Extraction
Social media
Try Eureka
PatSnap group products