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Eukaryotic parameter-free transcriptome interactive analysis system and method based on cloud computing platform

A technology for interactive analysis of transcriptomes, which is applied in the field of interactive analysis systems for eukaryotic non-parameterized transcriptomes, can solve problems such as low efficiency of manual business processes, inability of personal computers and workstations to complete data processing, etc., and achieve the effect of meeting user needs

Inactive Publication Date: 2017-11-24
上海桑格信息技术有限公司
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Problems solved by technology

[0008] In order to solve the above problems, the present invention provides a eukaryotic no-parameter transcriptome interactive analysis system and method based on a computing cloud platform to solve the problems that personal computers and workstations cannot complete data processing and the existing manual business processes are inefficient

Method used

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  • Eukaryotic parameter-free transcriptome interactive analysis system and method based on cloud computing platform
  • Eukaryotic parameter-free transcriptome interactive analysis system and method based on cloud computing platform
  • Eukaryotic parameter-free transcriptome interactive analysis system and method based on cloud computing platform

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Embodiment Construction

[0039] In order to express the present invention more clearly, the present invention will be further described below with reference to the accompanying drawings.

[0040] see figure 1 , the eukaryotic non-parameter transcriptome interaction analysis system based on the computing cloud platform of the present invention, including

[0041] The project management module 10 is used for viewing and managing project information, and comprehensively managing all status analysis projects through projects, tasks, applications and files;

[0042] The basic analysis task submission module 11 is used to set the basic parameter operation task, and integrate and package the results and the original data into corresponding project files according to the preset format;

[0043] The interactive result analysis module 12 is used to generate analysis results according to user requests, and visualize the results;

[0044] The project management module is connected with the interactive result an...

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Abstract

The invention discloses a eukaryotic parameter-free transcriptome interactive analysis system and method based on a cloud computing platform. The system comprises a project management module, a basic analysis task submission module and an interactive result analysis module. The method comprises the steps that firstly, sequencing data is uploaded to a local cluster server, a project is built in the project management module, meanwhile, a database of a client is uploaded to the local cluster server or an online database is selected, and project locking operation or the operation of sharing with others can be conducted in the project management module; then, in the basic analysis task submission module, a user can conduct parameter analysis on the sequencing data through a visual interface, and a project file is generated after analysis; before the analysis, whether the data quality control is qualified or not is judged first, and if yes, the parameter analysis is conducted; if not, the sequencing data is directly returned, and an error is reported; the generated project file is transferred to the interactive result analysis module for interactive analysis, and a visually presented report is obtained.

Description

technical field [0001] The invention relates to the technical field of biological information analysis, in particular to a computing cloud platform-based eukaryotic non-parameter transcriptome interactive analysis system and a method thereof. Background technique [0002] Transcriptome, also known as transcriptome or expression profile, refers to the sum of all RNAs expressed in a certain species, tissue or cell type during a certain period, including protein-coding mRNA and various non-coding RNAs (rRNA, tRNA, snoRNA, snRNA, microRNA, etc.). Transcriptome contains time and space limitations, which is a dynamic connection between genome and external physical characteristics. Transcriptome reflects genes actively expressed under specific conditions, and is an important means to study cell phenotype and function. Transcriptomics is a discipline that studies gene expression changes at the RNA level. For species that do not yet have complete genome sequences, transcriptome sequ...

Claims

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Application Information

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IPC IPC(8): G06F19/20G06F19/26G16B45/00
CPCG16B25/00G16B45/00
Inventor 刘彬旭余果郭权任一史彩萍曾静石今周玄
Owner 上海桑格信息技术有限公司
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