CRISPR single-base restoration system and application thereof

A repair system, single-base technology, applied in the field of gene editing, which can solve problems such as off-target, reduced stability and melting temperature, and slight toxicity

Pending Publication Date: 2019-03-26
THE FIRST AFFILIATED HOSPITAL OF SUN YAT SEN UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0005] In 2015, it was reported that for the first time in the world, CRISPR / Cas9 gene editing technology was used to repair abnormally fertilized human 3PN fertilized eggs by HBB gene editing. Obvious miss
Partial sulfur modification of terminal nucleotides can greatly improve the ability of ODN to resist nuclease degradation without having to carry out sulfur modification on the entire ODN. Hybridization forms a stable double-strand structure, but studies have shown that comparing the changes in its Tm value, it is found that the stability and melting temperature (Tm) of this double-strand has a certain decrease compared with the double-strand of the corresponding normal oligonucleotide. In addition, thiooligonucleotides are often mildly toxic to normal cells

Method used

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  • CRISPR single-base restoration system and application thereof
  • CRISPR single-base restoration system and application thereof
  • CRISPR single-base restoration system and application thereof

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0043] An embodiment of the CRISPR single base repair system in the present invention, its preparation method is as follows:

[0044]The primers used in this example were designed using the Primer3 Plus online primer design tool (http: / / www.primer3plus.com / cgi-bin / dev / primer3plus.cgi); synthesized and integrated by Suzhou Jinweizhi Biotechnology Co., Ltd. The sulfur-modified donor-ssDNA was synthesized by Suzhou Jinweizhi Biotechnology Co., Ltd.; the engineering enzyme T7E1 enzyme used to identify whether the knife (that is, the CRISPR / Cas9 plasmid) cuts was purchased from NEW ENGLAND BIOLAB (article number #M0302S), and identified Donor integration repair engineering enzyme KspAI enzyme was purchased from NEW ENGLAND BIOLAB (article number is #R0105V). Sanger sequencing was entrusted to Sangon Bioengineering (Shanghai) Co., Ltd., and plasmid construction based on the sequence designed by the inventor of the present application was completed by Suzhou Jinweizhi Biotechnology C...

Embodiment 2

[0067] Example 2 Identification of the cutting effect of the CRISPR / Cas9 plasmid knife and whether the donor is integrated

[0068] identification method : After co-transfecting 293TT cells with the CRISPR / Cas9 plasmid and donor-ssDNA prepared in Example 1, extract the total cellular genomic DNA and carry out Sanger sequencing to verify the cutting effect of the CRISPR / Cas9 plasmid knife and whether the donor is integrated.

[0069] The specific operation method is as follows:

[0070] (1) Cell culture

[0071] The 293TT cell line was incubated with complete DMEM medium containing 10% serum at 37°C, 5% CO 2 Cultivated in an incubator. When the cell confluency reached 90%, it was digested with 0.25% trypsin, then terminated with DMEM complete medium, inoculated into a 6-well plate, and continued to culture for 24 hours.

[0072] (2) Plasmid transfection

[0073] After 24 hours, confirm that the cells are well adhered to the wall and the cell confluency reaches 80%, and th...

Embodiment 3

[0112] Example 3 Verification of site-directed mutagenesis effect of the CRISPR single base repair system of the present invention

[0113] identification method : By selecting monoclonal cells to further identify and screen out the 293TT cell line with β17 mutation and nonsense mutation; specifically, each group of cells after transfection 48h in Example 2 was digested with 0.25% trypsin and blown into a single Cells were suspended in DMEM medium with 10% fetal bovine serum for later use.

[0114] Dilute the cell suspension in gradient multiples, each group of cells were respectively inoculated in a dish containing 10mL 37°C pre-warmed culture medium at a gradient density of 50, 100, and 200 cells per dish, and rotated gently to make the cells evenly dispersed. Ultimately, the culture wells contain at most 1 cell. Set at 37°C 5% CO 2 and cultured in a cell culture incubator with saturated humidity for 2-3 weeks.

[0115] Observe frequently, when there are clones visible ...

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Abstract

The invention discloses a CRISPR single-base restoration system. The CRISPR single-base restoration system is capable of expressing eukaryotic expression vectors of sgRNA and Cas9 and single strandedoligonucleotide as a donor template, wherein the base sequence of single stranded oligonucleotide is basically the same as the base sequence between bases 30-60 on two sides of a to-be-restored singlebase, and the differences between the two base sequences are that the base corresponding to the to-be-restored single base is a non-mutation wild base, and nonsense mutation occurs on one side of theto-be-restored single base. The invention further discloses application of the CRISPR single-base restoration system in the preparation of drugs for treating beta thalassemia caused due to CD17A-T point mutation of a beta bead protein gene. According to the CRISPR single-base restoration system, a CRISPR/Cas expression plasmid and a donor are commonly transfected into cells, the traceless directional transformation of gene mutation sites in beta17 thalassemia is specifically induced in a 293TT cell, and the method has very important clinical application values in the execution of gene editingaccurate treatment on diseases based on single-gene point mutation.

Description

technical field [0001] The invention relates to the technical field of gene editing, in particular to a CRISPR single-base repair system and its application in the treatment of β17 thalassemia genetic diseases caused by single gene point mutations. Background technique [0002] β-thalassemia (β-thalassemia) is a disease caused by a decrease in or failure to synthesize the globin peptide chains that make up hemoglobin HbA (a2β2) due to mutations or deletions in the β-globin gene, resulting in an imbalance in the synthesis of a and β peptide chains. An autosomal recessive genetic disorder. The point mutation of β-thalassemia gene is often the most common, and the CD17(A→T) point mutation of β-globin gene is one of the earliest reported point mutations related to β-thalassemia disease. [0003] Thalassemia is currently treated with lifelong blood transfusions, yet the vast majority of children die before adulthood despite aggressive treatment. Another treatment option is bone...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12N15/90C12N15/85C12N15/10A61K48/00A61P7/06
CPCA61K48/005A61P7/06C12N15/102C12N15/85C12N15/907C12N2800/107C12N2810/10
Inventor 胡争周灿权樊惟文麦庆云
Owner THE FIRST AFFILIATED HOSPITAL OF SUN YAT SEN UNIV
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