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Y-shaped joint and method for double-sample co-construction sequencing library

A sequencing library and double-sample technology, applied in the field of biomedicine, can solve the problems of low sample throughput, data waste, and large limitations, and achieve the effect of reducing costs and improving sample detection throughput

Active Publication Date: 2020-04-14
BEIJING KEXUN BIOTECH CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

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Problems solved by technology

However, considering the cost of sequencing, the cost of single-end sequencing is generally higher than that of paired-end sequencing, and the sample throughput is not high
Taking NextSeq 500 as an example, the maximum number of samples for a single detection is only 96, which has great limitations in application scenarios with a large demand for sample detection
If non-invasive prenatal testing uses paired-end sequencing (PE sequencing) on ​​a higher-throughput sequencing platform (such as illumina HiSeq X-ten or NovaSeq 6000), the number of testing samples can be increased, and the cost per unit of data volume can also be reduced to a certain extent. Reduced, but at the same time, because the analysis only requires single-end sequencing data, it causes a waste of data at the other end

Method used

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  • Y-shaped joint and method for double-sample co-construction sequencing library
  • Y-shaped joint and method for double-sample co-construction sequencing library
  • Y-shaped joint and method for double-sample co-construction sequencing library

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Embodiment 1

[0057] 1. Two samples were built separately (single library):

[0058] In order to achieve double-sample co-construction of the library, it is first necessary to build a Y-type linker (Y5 linker: the first sequence has a sequence as shown in SEQ ID NO: 1) for two samples (specific non-invasive prenatal test samples, that is, free plasma DNA from pregnant women). The nucleotide sequence of the second sequence has the nucleotide sequence shown in SEQ ID NO: 2; Y7 linker: the third sequence has the nucleotide sequence shown in SEQ ID NO: 3, and the fourth sequence has the nucleotide sequence shown in The nucleotide sequence shown in SEQ ID NO: 4) is separately built library, what build library separately in the present embodiment uses KAPA Hyper Prep Kit, and flow process is as follows:

[0059] (1) End Repair & Add A Reaction

[0060] Melt the end repair buffer at room temperature, vortex for 10 seconds, and centrifuge briefly for 3 seconds; prepare the end repair reaction solu...

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Abstract

The invention discloses a Y-shaped joint and a method for a double-sample co-construction sequencing library. A first Y-shaped joint comprises a first sequence and a second sequence, wherein the firstsequence comprises a P5 sequence, an i5 sequence, an SP1 sequence and an N1 sequence which are connected in sequence, and the second sequence comprises an L1 sequence and an N1c sequence which are connected in sequence. A second Y-shaped joint comprises a third sequence comprising a P7 sequence, an i7 sequence, an SP2 sequence and an N2 sequence which are connected in sequence; and a fourth sequence comprising an L2 sequence and an N2c sequence which are connected in sequence; L1, L2, N1, N1c, N2 and N2c sequences are different from the illumina joint sequence and the human genome sequence and are not complementary with the illumina joint sequence and the human genome sequence; N1 is complementary with N1c, N2 is complementary with N2c, and N1 is different from N2 and N2c and is not complementary with N2 and N2c. The 3' terminal of L1 and the 5' terminal of L2 have complementary regions. By applying the technical scheme provided by the invention, two independently built samples can beconnected together to form a library, and normal sequencing is carried out.

Description

technical field [0001] The present invention relates to the field of biomedical technology, in particular, to a Y-shaped adapter for co-constructing a sequencing library with two samples and a method for co-constructing a sequencing library with two samples. Background technique [0002] As the most mature project for the clinical transformation of genetic testing, there are various methods of non-invasive prenatal testing: such as NGS (Next Generation Sequencing) method, multiplex PCR method, probe method, digital PCR method and chip method, etc., among which multiplex PCR method , probe method, digital PCR method and chip method have the advantages of low cost, short cycle, high sensitivity, etc., especially the multiplex PCR method, chip method and digital PCR method have greatly improved the detection throughput in recent years, but The throughput of NGS detection still cannot be achieved. At present, there are many research articles on these methods, and there are also...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C40B80/00C40B50/06C12Q1/6869
CPCC40B80/00C40B50/06C12Q1/6869
Inventor 刘运超赵静波方楠王晓璐伍启熹王建伟刘倩唐宇
Owner BEIJING KEXUN BIOTECH CO LTD