SNP (Single Nucleotide Polymorphism) molecular marker linked with peanut bacterial wilt resistant major QTL (Quantitative Trait Loci) and application thereof
A molecular marker, anti bacterial wilt technology, applied in the determination/inspection of microorganisms, recombinant DNA technology, biochemical equipment and methods, etc., to achieve the effect of improving breeding efficiency
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Embodiment 1
[0036] This example provides the development process of the SNP molecular marker BWRB03-R linked to the main QTL site qBWRB03 for resistance to bacterial wilt in peanut, as follows.
[0037] Test materials: A peanut bacterial wilt-susceptible variety Zhonghua 10 was used as the female parent, and a peanut bacterial wilt-resistant germplasm ICG12625 was used as the male parent to obtain a recombinant inbred line (RIL )group.
[0038] Phenotype identification: In 2019 and 2020, the bacterial wilt resistance of 140 strains of Zhonghua 10, ICG12625 and RIL populations was identified in the Hongan bacterial wilt disease nursery of the Institute of Oil Crops, Chinese Academy of Agricultural Sciences. A completely randomized block experimental design was adopted, with 3 repetitions. Each time, each material was planted in a row of 20 plants, with a row spacing of 30 cm and a plant spacing of 10 cm. Adopt standard field management practices. After all the seedlings emerged, the tot...
Embodiment 2
[0045] This example provides the 131 RILs of ICG12625 and Zhonghua 10 that obtained survival rate data for both environments in Example 1 by using the SNP molecular marker BWRB03-R linked to the major bacterial wilt resistance locus qBWRB03 to test. Specific steps are as follows.
[0046] Using genomic DNA as a template and the sequences shown in SEQ ID NO.2-3 as primers, the SNP molecular marker BWRB03-R was amplified with the KAPA2G Fast MultiplexMix kit. The PCR conditions were: 95°C pre-denaturation for 3 minutes; 95°C denaturation for 15 s, 55°C renaturation for 30 s, 72°C extension for 30 s, a total of 30 cycles; finally 72°C extension for 5 min, 4°C incubation. After the amplification product was added with a sequencing adapter, the Illumina HiSeq platform was used for Paired-end 150bp (PE150) sequencing, and the sequencing sequence was compared to the reference sequence to detect the base of the SNP site. If the RIL is consistent with the base of the SNP site detecte...
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