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Method

a technology of method and protein, applied in the field of method, can solve the problems of protein folding and function usually being compromised, and achieve the effect of reducing the number of steps

Inactive Publication Date: 2006-02-02
SENSE PROTEOMIC LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

[0011] The Inventors have now developed a novel approach which solves the problems described above by providing methodology which allows each protein in a proteome to be tagged with a common marker at a defined position within the protein without requiring any prior knowledge of the DNA sequence of the corresponding genes. This ‘tag’ can then be used to impart a commonality and specificity to downstream immobilization and purification procedures, which in turn enables the creation of spatially defined arrays in which many thousands of proteins from a given proteome are displayed.

Problems solved by technology

However, if the truncations remove any N— or C-terminal extensions and cross a domain boundary, folding and function of the protein are usually then compromised.

Method used

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example 1

[0097] (a) Vector Construction (see FIG. 1).

[0098] The Inventors constructed a vector pMM106H derived from pUC19 which contains a strong hybrid promoter (Ptrc) to drive the expression of genes cloned into an Nco I site immediately downstream of the promoter sequence. The Inventors inserted a 676 bp nonsense DNA sequence as a stuffer fragment between the Nco I site and a downstream Hpa I site. Hpa I is a blunt-end cutter and is positioned to cleave the vector such that the downstream DNA encodes a polyasparagine, hexahistidine peptide if the reading frame is on the first base of the blunt-end. Following the hexahistidine tag is an amber stop codon (TAG) followed by the gene encoding the green fluorescent protein (GFP) of the jellyfish Aequorea victoria. The construction of pMM106H was confirmed by sequencing. 100641 Genes cloned into pMM106H as Nco I / blunt-end fragments result in fusions to the His-tag and GFP only if the correct reading frame is created at the Hpa I site during clo...

example 2

[0126] (a) Vector Construction.

[0127] The Inventors constructed a second vector, pMM 11, which is essentially the same as pMM106H (see Example 1), except that the 676 bp Nco I / Hpa I nonsense DNA stuffer fragment is replaced with a 300 bp Nco I / Hpa I fragment derived from the Escherichia coli gdhA gene; the Hpa I cloning site is replaced with a Sma I site, positioned such that the downstream hexahistidine tag is out of frame with the gdhA gene by 2 nucleotides; and the ATG start codon of the GFP gene is replaced with the codon for alanine (GCG). The vector has been designed such that an insert cloned into the Sma I site must contain the first nucleotide of a codon at its 3′ end to put it in frame with the hexahistidine tag and GFP. The construction of pMM111 was confirmed by sequencing.

[0128] (b) Modification Procedure to Introduce Tag.

[0129] The Inventors then carried out a procedure identical to that described in Example 1 except for the following modifications. Firstly, only α-...

example 3

[0133] (a) Modification of a Second Protein Using the Hexahistidine Tag.

[0134] Following the procedure as described in Example 1 for glutathione-S-transferase, the Inventors have demonstrated that the procedure is independent of the sequence of the gene being manipulated.

[0135] Thus starting with a plasmid encoding human transcription factor NF-κB p50 and following exactly the procedure described in Example 1 unless otherwise specified, the Inventors have been able to demonstrate the modification of NF-κB p50 such that the first in-frame stop codon has been excised and replaced by an in-frame fusion to DNA encoding a polyasparagine, hexahistidine tag and GFP (when the amber stop codon is suppressed). The clones that fluoresced green, when excited with far uv light (365 nm) were further characterized. Colony Western blots using an anti-His-tag antibody allowed identification of clones expressing hexahistidine-tagged protein. The soluble protein lysates of these clones were resolved...

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Abstract

The present invention relates to novel methods of producing proteins in which one or more domains are full length and correctly folded and which are each tagged at either the N— or C-terminus with one or more marker moieties and arrays containing such proteins, as well as the use of such proteins in arrays for rapid screening.

Description

CROSS-REFERENCE TO RELATED APPLICATIONS [0001] The present invention is a divisional of U.S. application Ser. No. 10 / 114,334, filed Apr. 3, 2002, which is a continuation-in-part of International Application No. PCT / GBO1 / 03693, filed Aug. 17, 2001, which claims priority benefit of U.S. Provisional Application No. 60 / 247,995, filed Nov. 14, 2000 and GB Application No. 0020357.0, filed Aug. 17, 2000, each of which is incorporated by reference in their entirety.BACKGROUND OF THE INVENTION [0002] 1. Field of the Invention [0003] The present invention relates to novel methods of producing proteins in which one or more domains are full length and correctly folded and which are each tagged at either the N— or C-terminus with one or more marker moieties and arrays containing such proteins, as well as the use of such arrays in rapid screening. [0004] 2. Related Art [0005] The genome mapping projects are revolutionizing the therapeutic target discovery process and with it the drug discovery pr...

Claims

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Application Information

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IPC IPC(8): C40B30/04C40B40/06G01N33/68
CPCG01N33/6845C40B30/04
Inventor KOZLOWSKI, ROLANDMCANDREW, MICHAELBLACKBURN, JONATHANMULDER, MICHELLESAMADDAR, MITALI
Owner SENSE PROTEOMIC LTD