Hydrogen production from microbial strains
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example 1
Bacterial Strains and Growth Conditions
[0032]The bacterial strains and plasmids used are listed in Table 1.
TABLE 1Strains, Plasmids and PrimersStrain, plasmid,Reference, origin,or primerGenotype or phenotypeaor descriptionR. palustris strainsCGA009Wild type strain; spontaneous CmR derivative of CGA0011CGA570Spontaneous mutant able to grow with cyclohexanecarboxylateCGA009, thisin the presence of ammonium sulfate (NifA S213P)studyCGA571Spontaneous mutant able to grow with cyclohexanecarboxylateCGA009, thisin the presence of ammonium sulfate (NifA Q209P)studyCGA572Spontaneous mutant able to grow with cyclohexanecarboxylateCGA009, thisin the presence of ammonium sulfate (NifA, L212R)studyCGA574Spontaneous mutant able to grow with cyclohexanecarboxylateCGA009, thisin the presence of ammonium sulfate (NifA M202K)studyCGA757ΔnifA, 1332 bp deletedCGA009, thisstudyCGA581nifA* (Q209P)CGA757, thisstudyCGA584nifA* (M202K)CGA757, thisstudyE. coli strainsDH5αF−λ− recA1Δ(lacZYA-argF)U169hsdR17thi...
example 2
Strain Constructions
[0034]DNA fragments (˜3 kb) spanning nifA plus flanking regions from CGA571 and CGA574 were generated by PCR. The amplification products contained engineered XbaI cloning sites at both ends. These products were digested with XbaI and cloned into XbaI-digested pUC19 to generate pUC19-nifA *571, and pUC19-nifA*574. The Xba-I fragments were then cloned into pJQ200KS to generate pJQ200KS-nifA *571, and pJQ200KS-nifA*574. These constructs were mobilized from E. coli S17-1 into R. palustris CGA757 (ΔnifA, this strain cannot grow under nitrogen-fixing conditions) by conjugation. Colonies that contained plasmids that had undergone a single recombination to become inserted into the chromosome were identified by growth on PM plus Gm. These colonies were spread onto nitrogen-fixing agar medium supplemented with 10% sucrose and incubated anaerobically in order to select for strains that had undergone a double recombination to lose the sacB-containing vector. Gene replacement...
example 3
Description of the R. palustris Genechip
[0035]R. palustris custom designed GeneChip was manufactured by Affymetrix (Santa Clara, Calif.) with the following specifications: 99.8% of R. palustris predicted open reading frames genes were represented by unique probe sets (16 probe pairs and their corresponding mismatch for each). In addition, the GeneChip contains information for all intergenic regions larger than 150 bp.
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