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Methods and products for transfecting cells

a technology of transfection and products, applied in the field of methods and products for transfection of cells, can solve the problems of unexplored effects of such treatment on transfection efficiency and transfection-associated toxicity, and the inability to use recombinant serum albumin, and achieve the effect of low toxicity and high translation efficiency

Inactive Publication Date: 2015-06-18
FACTOR BIOSCI
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

The patent text describes the development of synthetic RNA molecules that can be used for therapeutic purposes, including the treatment of various diseases such as diabetes, heart disease, and cancer. The invention also provides methods for producing and delivering these molecules to cells, as well as a cell-culture medium for efficient transfection, reprogramming, and gene editing. The patent also mentions the use of cells for therapeutic purposes, such as for the treatment of type 1 diabetes and heart disease. Overall, the invention provides a valuable tool for research and development of new treatments for various diseases.

Problems solved by technology

However, the undefined nature of serum makes cells that are contacted with this component undesirable for both research and therapeutic applications.
However, recombinant serum albumin does not benefit from such treatment, even in the same sensitive stem-cell-culture applications (See Ng et al.
In addition, the effect of such treatment on other cell types such as human fibroblasts, and the effect of such treatment on transfection efficiency and transfection-associated toxicity have not been previously explored.
While several reprogramming methods have been previously described, most that rely on ectopic expression require the introduction of exogenous DNA, which can carry mutation risks.
DNA-free reprogramming methods based on direct delivery of reprogramming proteins have been reported, however these methods are too inefficient and unreliable for commercial use.
In addition, RNA-based reprogramming methods have been described, however, existing RNA-based reprogramming methods are slow, unreliable, and inefficient when performed on adult cells, require many transfections (resulting in significant expense and opportunity for error), can reprogram only a limited number of cell types, can reprogram cells to only a limited number of cell types, require the use of immunosuppressants, and require the use of multiple human-derived components, including blood-derived HSA and human fibroblast feeders.
The many drawbacks of previously disclosed cell-reprogramming methods make them undesirable for both research and therapeutic use.
As a result, these gene-editing methods are inefficient, and carry a risk of uncontrolled mutagenesis, making them undesirable for both research and therapeutic use.
Methods for DNA-free gene editing of somatic cells have not been previously explored, nor have methods for simultaneous or sequential gene editing and reprogramming of somatic cells.
Finally, the use of gene editing in an anti-bacterial, anti-viral, or anti-cancer treatment has not been previously explored.
However, the use of gene-edited reprogrammed cells to generate genetically modified organisms, including mice and rats has not been previously explored.

Method used

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  • Methods and products for transfecting cells
  • Methods and products for transfecting cells
  • Methods and products for transfecting cells

Examples

Experimental program
Comparison scheme
Effect test

example 1

RNA Synthesis

[0172]RNA encoding the human proteins Oct4, Sox2, Klf4, c-Myc-2 (T58A), and Lin28 and comprising various combinations of canonical and non-canonical nucleotides, was synthesized from DNA templates (Table 1). Samples of the RNA were analyzed by agarose gel electrophoresis to assess the quality of the RNA (FIG. 1). The RNA was then diluted to between 100 ng / μL and 500 ng / μL. For certain experiments, an RNase inhibitor (Superase•In™, Life Technologies Corporation) was added at a concentration of 1 μL / 100 μg of RNA. RNA solutions were stored at 4 C. For certain experiments involving RNA mixtures, RNA encoding Oct4, Sox2, Klf4, c-Myc-2 (T58A), and Lin28 was mixed at a molar ratio of 3:1:1:1:1.

TABLE 1ReactionivTTemplateNucleotidesVolume / μL Yield / μgOct4A, G, psU, 5mC2101976.0Sox2A, G, psU, 5mC70841.7K1f4A, G, psU, 5mC70950.0c-Myc-2 (T58A)A, G, psU, 5mC70535.8Lin28A, G, psU, 5mC70551.0Oct4A, G, psU, 5mC1051181.8Sox2A, G, psU, 5mC35533.9K1f4A, G, psU, 5mC35552.9c-Myc-2 (T58A)A, ...

example 2

Transfection Medium Formulation

[0173]A medium was developed to support efficient transfection, reprogramming, and gene-editing of cells: DMEM / F12+10 μg / mL insulin+5.5 μg / mL transferrin+6.7 ng / mL sodium selenite+20 ng / mL bFGF+5 mg / mL treated human serum albumin.

[0174]Variants of this medium were also developed to provide improved performance when used with specific transfection reagents, specific nucleic acids, and specific cell types: DMEM / F12+10 μg / mL insulin+5.5 μg / mL transferrin+6.7 ng / mL sodium selenite+4.5 μg / mL cholesterol+20 ng / mL bFGF+5 mg / mL treated human serum albumin, DMEM / F12+10 μg / mL insulin+5.5 μg / mL transferrin+6.7 ng / mL sodium selenite+1 μM hydrocortisone+20 ng / mL bFGF+5 mg / mL treated human serum albumin, and DMEM / F12+10 μg / mL insulin+5.5 μg / mL transferrin+6.7 ng / mL sodium selenite+4.5 μg / mL cholesterol+1 μM hydrocortisone+20 ng / mL bFGF+5 mg / mL treated human serum albumin.

[0175]Examples of additional components that were added to the cell-culture medium in certain ex...

example 3

Transfection of Cells with Synthetic RNA

[0182]For transfection in 6-well plates, 2 μg RNA and 6 μL transfection reagent (Lipofectamine™ RNAiMAX, Life Technologies Corporation) were first diluted separately in complexation medium (Opti-MEM®, Life Technologies Corporation) to a total volume of 600 μL each. Diluted RNA and transfection reagent were then mixed and incubated for 15 min at room temperature, according to the transfection reagent-manufacturer's instructions. Complexes were then added to cells in culture. Between 30 μL and 240 μL of complexes were added to each well of a 6-well plate, which already contained 2 mL of transfection medium per well. Plates were then shaken gently to distribute the complexes throughout the well. Cells were incubated with complexes for 2 hours to overnight, before replacing the medium with fresh transfection medium (2 mL / well). Volumes were scaled for transfection in 24-well and 96-well plates. Cells were fixed and stained 20-24 h after transfecti...

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Abstract

The present invention relates in part to nucleic acids encoding proteins, nucleic acids containing non-canonical nucleotides, therapeutics comprising nucleic acids, methods, kits, and devices for inducing cells to express proteins, methods, kits, and devices for transfecting, gene editing, and reprogramming cells, and cells, organisms, and therapeutics produced using these methods, kits, and devices. Methods for inducing cells to express proteins and for reprogramming and gene-editing cells using RNA are disclosed. Methods for producing cells from patient samples, cells produced using these methods, and therapeutics comprising cells produced using these methods are also disclosed.

Description

CROSS REFERENCE TO RELATED APPLICATIONS[0001]The present application is a continuation of U.S. patent application Ser. No. 14 / 296,220, filed Jun. 4, 2014, which is a continuation of International Patent Application No. PCT / US2012 / 067966, filed on Dec. 5, 2012, which claims priority to U.S. Provisional Application No. 61 / 566,948, filed on Dec. 5, 2011, U.S. Provisional Application No. 61 / 569,595, filed on Dec. 12, 2011, U.S. Provisional Application No. 61 / 637,570, filed on Apr. 24, 2012, and U.S. Provisional Application No. 61 / 664,494, filed on Jun. 26, 2012, which are all hereby incorporated by reference in their entireties.FIELD OF THE INVENTION[0002]The present invention relates in part to nucleic acids encoding proteins, nucleic acids containing non-canonical nucleotides, therapeutics comprising nucleic acids, methods, kits, and devices for inducing cells to express proteins, methods, kits, and devices for transfecting, gene editing, and reprogramming cells, and cells, organisms,...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): C12N15/87C12N9/16
CPCC12N15/87C12Y301/21C12N9/16C08K5/5399C08G77/08C12N9/22C12N15/907C12N5/0696C12N2500/40C12N2510/00A61P17/02A61P21/00A61P21/04A61P25/00A61P25/02A61P25/14A61P25/16A61P25/28A61P27/02A61P31/18A61P35/00A61P37/04A61P43/00A61P7/06A61P9/10A61P3/10Y02E10/52C08L83/04C12N5/0656A61K31/7088A61P9/00A61K48/00C12P21/00C12Q1/6806C12N2501/998Y02E10/50H01L31/048C12N2800/80C12N5/0647C12N5/0657C12N2500/25C12N2500/44C12N2501/115C12N2501/155C12N2501/165C12N2501/2303C12N2501/26C12N2501/91C12N2506/09A61K35/28A61K2035/124
Inventor ANGEL, MATTHEWROHDE, CHRISTOPHER
Owner FACTOR BIOSCI