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Nucleic acid detection method applying multiplex PCR array technology

A technology for detecting and detecting primers, which is applied in the biological field and can solve the problems of different lengths, difficulty in setting the annealing temperature program of the mPCR system, and reducing the detection sensitivity of the mPCR.

Active Publication Date: 2013-02-20
ZHEJIANG MEDICAL COLLEGE
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Simultaneous PCR detection of multiple gene target sequences often leads to the phenomenon that in order to ensure the specificity of the primers, it is difficult to unify the Tm values ​​of the primers with different lengths and GC content, which affects the annealing temperature of the entire mPCR system. Difficulty with program setup, which reduces the sensitivity of mPCR detection

Method used

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  • Nucleic acid detection method applying multiplex PCR array technology
  • Nucleic acid detection method applying multiplex PCR array technology
  • Nucleic acid detection method applying multiplex PCR array technology

Examples

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Effect test

Embodiment 1

[0072] Example 1 Application of mPCR detection in a single detection object

[0073] Taking the detection of Acinetobacter baumannii (Ab) culture as an example, the present invention relates to the application of the mPCR system. Since the samples used are all known Ab cultures, this example aims to illustrate the detection sensitivity of the method of the present invention and ordinary mPCR without UT sequence. 1. Sample collection.

[0074] Ab clinical isolates were obtained from the local Centers for Disease Control and Prevention (CDC).

[0075] 2. Acquisition of Ab genome information.

[0076] Ab complete genome sequence information was obtained from GenBank. Three specific detection segments were determined, and the genes anchored by each segment involved the recA gene, the 16S-23S ITS region, and the OXA-51-like gene, and were detected by mPCR to improve the specificity of Ab identification.

[0077] 3. Select specific PCR primers for the three detection segments, a...

Embodiment 2

[0091] Example 2 Application of mPCR detection in multiple detection objects

[0092] This example mainly illustrates how the mPCR system uses a variety of specific detection primers to identify unknown samples. That is, the detection of Streptococcus pneumoniae (Sp), Neisseria meningitidis (Nm) and Listeria monocytogenes (Lm) in clinical cerebrospinal fluid specimens is the main cause of meningitis pathogenic bacteria. The main difference between this example and Example 1 is that for complex samples (containing multiple nucleic acid sequences to be detected, or multiple species), 3 detection target fragments are set for each nucleic acid sequence of the species to be detected, involving 3 For the UT+specific detection primer complex, the UT sequence is the same; for different species to be tested, there are different UT primer pairs to show the difference, but the Tm values ​​of each UT are similar, and the mPCR reaction conditions are uniform. In this way, the vertical di...

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Abstract

The present invention discloses a nucleic acid detection method applying a multiplex PCR array technology, and further relates to universal tag (UT) sequences, a primer pair comprising the universal tag sequences and specific detection primers (5'-UT primer+specific detection primer-3'), a kit containing the universal tag sequences or the primer pair, and applications of the sequences, the primer pair and the kit in nucleic acid biological detection, wherein the UT sequences meet the following conditions: 1) the UT sequences of the upstream primer and the downstream primer are different, and Tm value difference does not exceed +-1 DEG C, and is about 5-10 DEG C greater than a detection primer Tm value; and 2) the UT sequences are the randomly-designed DNA fragments, and do not have homology with the sequence of the organism requiring detection. According to the detection method, sensitivity and specificity of nucleic acid detection are increased through combination of the mPCR and the universal tag sequences.

Description

1. Technical field [0001] The invention relates to a nucleic acid detection method, in particular to a nucleic acid detection method using multiple PCR array technology, and belongs to the field of biotechnology. 2. Background technology [0002] Multiplex PCR technology (multiplex PCR, mPCR) is another major innovation in this technical field since the birth of PCR technology in the 1980s. Traditional PCR technology only uses a pair of primers to generate a nucleic acid fragment through amplification, which is mostly used for the identification of a single target sequence. However, mPCR is a PCR reaction in which more than two pairs of primers are used in the same PCR reaction system to simultaneously amplify multiple nucleic acid fragments. The reaction principle, reaction reagents and operation process are the same as those of classic PCR. [0003] The biggest feature of mPCR is that it improves the efficiency of detection, making PCR a high-throughput method: (1) high e...

Claims

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Application Information

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IPC IPC(8): C12N15/11C12Q1/68C12Q1/14C12Q1/04
Inventor 杜蓬张磊邵世和孙爱华王黎芳周海鸥银国利何方蒋锦琴花扣珍覃江凤
Owner ZHEJIANG MEDICAL COLLEGE
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