Quantitative detection method of bovine-derived and porcine-derived components based on droplet digital PCR (polymerase chain reaction) as well as primer, probe and kit
A quantitative detection, porcine-derived technology, applied in the field of molecular biology, can solve the problems of differences in amplification efficiency, deviation, and undetectable amplification of target DNA molecules, and achieve the effect of high sensitivity and specificity
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Embodiment 1
[0041] Validation of test method accuracy
[0042] 1. Instruments, reagents and test samples
[0043] Instruments: Bio-Rad QX200 micro-droplet digital PCR instrument, automatic nucleic acid extraction system, micro-spectrophotometer, ultra-fast refrigerated centrifuge.
[0044] Reagents: 2×Droplet PCR Supermix, Droplet generation oil (purchased from Bio-Rad Biotechnology Co., Ltd.).
[0045] Primers and probes were synthesized by Dalian Bao Biotechnology Co., Ltd., and the sequences are as follows:
[0046] Two primers for bovine-derived components
[0047] Bov-BGH-F: 5'-CCGATGGATGTGTTCAGAGCT-3';
[0048] Bov-BGH-R: 5'-GCCAAATGTCTGGGTGTAGATACC-3';
[0049] A probe Bov-BGH-Pr for detecting bovine-derived components: 5′-TGGGCTTTAGGGCTTCCGAATGTGAA-3′;
[0050] Two primers for detecting components of porcine origin
[0051] Sus-β-Actin-F: 5'-CGAGACCTTCAACACCCCAG-3';
[0052] Sus-β-Actin-R: 5'-GGCGTACCCCTCGTAGATG-3';
[0053] A probe Sus-β-Actin-Pr for detecting porcine-der...
Embodiment 2
[0067] Sensitivity test of test method
[0068] 1. Instruments and reagents
[0069] Instruments: Bio-Rad QX200 micro-droplet digital PCR instrument, automatic nucleic acid extraction system, micro-spectrophotometer, ultra-fast refrigerated centrifuge.
[0070] Reagents: 2×Droplet PCR Supermix, Droplet generation oil (purchased from Bio-Rad Biotechnology Co., Ltd.); primers and probes (same as Example 1).
[0071] 2. Preparation of DNA template
[0072] The beef DNA and pork DNA were formulated into DNA solutions with bovine contents of 50%, 10%, 5%, 1%, 0.1%, and 0.01% by volume, respectively, as templates for loading samples.
[0073] 3. Preparation of reaction system
[0074] The total volume of the PCR reaction system is 20 μL, and the components are as follows: 10 μL of 2×ddPCR Supermix mixed reaction solution, primers Bov-BGH-F, Bov-BGH-R, Sus-β-Actin-F, Sus-β-Actin-R 1 μL each, probe Bov-BGH-Pr, Sus-β-Actin-Pr each 1 μL, template DNA 2 μL, add ddH 2 O was added to ...
Embodiment 3
[0082] Detection of samples of beef balls sold in the market
[0083] 1. Instruments and reagents
[0084] Instruments: Bio-Rad QX200 micro-droplet digital PCR instrument, automatic nucleic acid extraction system, micro-spectrophotometer, ultra-fast refrigerated centrifuge.
[0085] Reagents: 2×Droplet PCR Supermix, Droplet generation oil (purchased from Bio-Rad Biotechnology Co., Ltd.); primers and probes (same as Example 1).
[0086] Test sample: a beef ball sample purchased from the market.
[0087] 2. DNA extraction and template preparation
[0088] About 200 g of the sample was taken, dried to a constant weight, and then ground into meat powder, and 2 g was weighed to extract genomic DNA using the modified CTAB magnetic bead method, and the obtained DNA solution was used as a sample loading template.
[0089] 3. Preparation of reaction system
[0090] The total volume of the PCR reaction system is 20 μL, and the components are as follows: 10 μL of 2×ddPCR Supermix mix...
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