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Application of CDC20 co-expression gene network as glioma treatment target

A CDC20-M and glioma technology, applied in the biological field, can solve problems such as genome instability, gene site mutation, and chromosome instability

Inactive Publication Date: 2019-06-21
BEIJING NORMAL UNIVERSITY
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, CIN70signature also has its limitations. First, CIN70signature cannot specifically represent the situation of glioma. The establishment of CIN70signature integrates the database of 6 different tumors, and can get those genes that are common in various tumors, but each tumor is unique. With specificity, CIN70signature cannot fully represent genomic instability in glioma; secondly, CIN70signature cannot fully represent genomic instability, and the establishment of CIN70signature is based on an aneuploid score algorithm proposed by the author, so that genes The scores obtained by this algorithm are sorted and the top 70 genes are selected to form the CIN70signature. Aneuploidy can only represent an abnormal state in the number of chromosomes. It is currently believed that this phenomenon is caused by abnormal chromosome division, and the genome is unstable. Sexuality includes not only chromosomal instability, but also mutations in gene loci, so CIN70signature cannot fully represent genomic instability; finally, CIN70signature cannot predict the prognosis of a patient after CIN70signature typing, and CIN70signature is important for patients The prediction of prognosis needs to rely on the expression database containing a large number of patient samples. According to the expression level of CIN70signature in the database, take the median value to divide the patients into two groups of high and low, and then compare the prognosis between the two groups. If there is only one patient case, it is impossible effective prognostic prediction
In addition, although the above studies have revealed the importance of genome instability in the etiology of glioma, there are still very few studies on the mechanism and markers of genome instability.

Method used

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  • Application of CDC20 co-expression gene network as glioma treatment target
  • Application of CDC20 co-expression gene network as glioma treatment target
  • Application of CDC20 co-expression gene network as glioma treatment target

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0074] Example 1, CDC20-M is a sensitive marker of poor prognosis in glioma

[0075] 1. Establishment of CDC20-M and CREBRF-M gene co-expression modules

[0076] The genomic instability of tumors is manifested in the fact that tumor samples carry a large number of dynamically changing chromosomal abnormalities and gene mutations. Different tumor samples may carry different chromosomal abnormalities and gene mutations, and tumors may accumulate important genomic abnormalities at a certain developmental point, and then their genomes remain relatively stable. Therefore, how to identify tumor samples with unstable genomes has become a key issue in this field. One possible strategy is to screen gene expression profiles that correlate with the number of chromosomal variants in representative samples.

[0077] In order to screen specific gene groups that are closely correlated with genome instability in glioma, the present invention uses Pearson correlation analysis, and takes Pear...

Embodiment 2

[0099] Example 2, CDC20 co-expression gene network as a therapeutic target for glioma

[0100] 1. CDC20-M typing and identification of glioma cells

[0101] The present invention verifies CDC20-M at the level of cytology. The cells used include: 5 glioma cells (N5, N9, N33, N3 and N8) subcultured after primary culture of glioma blocks resected by surgery; 1 PDX-derived glioma cell (PDX cell ), the genome identification of the above six glioma cells were all IDH1 / 2 wild-type cells; a neuroblastoma cell line SK-N-SH (SK) was used as a control for other tumors, and human as a normal reference Astrocyte Human astrocytes (HA).

[0102] All the glioma cells used, except the PDX cells, the other five cells (N5, N9, N33, N3 and N8) were obtained from the patient's glioma tissue block from Beijing Tiantan Hospital (the cooperative unit has completed the ethical demonstration) , obtained through primary culture and subculture in our laboratory. PDX cells were obtained from patients ...

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Abstract

The invention discloses an application of CDC20 co-expression gene network as a glioma treatment target. The invention provides an application of an inhibitor in any of the following: (A1) preparing aproduct for treating glioma; (A2) treating glioma, wherein the inhibitor is a substance capable of reducing the expression activity and / or expression level of the following genes or encoded proteinsthereof: AURKA gene, CDC20 gene and / or KIF2C gene. The application proves that CDC20-M is a sensitive marker of genomic instability and poor prognosis in glioma, and finds potential glioma treatment targets in experimental analysis of main members of CDC20-M, and thus a new idea is provided for clinical diagnosis and treatment.

Description

technical field [0001] The invention relates to the field of biotechnology, in particular to the application of a CDC20 co-expression gene network as a therapeutic target for glioma. Background technique [0002] Glioblastoma (GBM) is the most common primary malignant tumor of the central nervous system in adults, accounting for more than 50%. Although there have been many studies to explore the causes of glioblastoma and feasible treatment options, the survival period of patients with glioblastoma is still very short, with a median survival period of less than two years. Glioblastoma is in a continuous evolutionary process with complex cytological and genetic heterogeneity. The genome of glioblastoma contains many single nucleotide variations and is also characterized by chromosomal instability (CIN). Studies have found that glioblastoma cells have a high frequency of abnormal chromosome number events (non- euploid) and chromosomal structural variation events. These geno...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12N5/09A61K45/00A61P35/00
Inventor 樊小龙张韵秋
Owner BEIJING NORMAL UNIVERSITY
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